Clone BS23839 Report

Search the DGRC for BS23839

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:238
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG12289-RA
Protein status:BS23839.pep: full length peptide match
Sequenced Size:1169

Clone Sequence Records

BS23839.complete Sequence

1169 bp assembled on 2011-01-27

GenBank Submission: KX802698

> BS23839.complete
GAAGTTATCAGTCGACATGACGCAATGGTGTGCTATCAGTGTAATGAAGG
CCGTGCTCTGCGTCGGCTGCACGGAGGTGGACTACGTGACCACCATGGAT
AAGGTCGACTTCCAGTGCGACAGGTGCAGCACCCAGAATGGAATGCTTCA
GCGCAGCGGAAGATCCTCGAATGTTAGTACGGCCCTGCGTCTGTTGGGCG
CCAATGTGGAGTTGTTCGGTGTGCTCACCCGTAATCCCACCTATCGCATG
ATTCTGGATGATCTCGAGCAGCGGGGCATTGATATTAGCCATTGTACATT
CACGGACGCAAGTCCTCCCTTTTCCACAATTGTCCAAGATCGCTGGACGC
GTCGTTGCACGGTGGTGTATTGCGACAAGTCATTTCCATATGTTACGGCA
GCGGATTTCCGCAAATTGGATCTCGATCAATACGGCTGGGTGAATTTTGA
GGCACGGAGTCCACGTGAAACTTGCGATATGATACGCCTAATCCTCGATC
ACAACAACGGGCGGGATGAACGGGATCGGATAGTGGTATCGTTGCAGATT
TTCAATTCCTTCGAACAGGTCGTGCATCTGATTGCCATGTGCGACTATGT
GTTCGTCACCAAGTATATAGCCGAGTCCAGAGGCTGGAAGTCACCGCTGG
AAGCCTGCGAGGGTGTCAATGCGCTACTGCGCATGCCAAGGAACATTAGA
ATTCGCAGACCCTGCATCATTGTGCCGTGGAGCAGCCTGGGAGCAGGATG
TATGACCACGGAAGGGGAGTACTTCGAAGTGCCAGCACACAAGCCGAAAA
AGATCATCGATCGGGTGGGCGATAGTGATTGCTTCACGGCGGGCTTCATT
TATGCCGCTTTTGTGCGGCAAAGGCGATTGGCCGAAGCCGTGGACTTCGC
CAATGCTGTGGCCAGCTATAAGTTGGGCTATGTGGGTTTCGATTGCCTGG
GTCATTTGCCAATCGATGCGGTTAAGCTGCCCGTTAGAATGAGGTGTGGC
AGTGAGGTGTCCTCCGACGATGAGGATAACGGCGATCAGTTGAATAGCTG
CAAGAAGCACCTGTTACGCCCGATTGAGTTCCTGCCGGAAAAGTCCTCCA
TTGCACCCACTGAGAAGGAAGTTCCGATCGAGACTTCGCAACTTTCTAGC
TAGAAGCTTTCTAGACCAT

BS23839.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-RA 1137 CG12289-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-RA 1395 CG12289-RA 179..1317 17..1155 5695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11457154..11458292 1155..17 5695 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:49:55 has no hits.

BS23839.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:07 Download gff for BS23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 179..1315 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:38 Download gff for BS23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 179..1315 17..1153 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:42 Download gff for BS23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 179..1315 17..1153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:42 Download gff for BS23839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11457156..11458292 17..1153 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:38 Download gff for BS23839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11450256..11451392 17..1153 100   Minus

BS23839.pep Sequence

Translation from 16 to 1152

> BS23839.pep
MTQWCAISVMKAVLCVGCTEVDYVTTMDKVDFQCDRCSTQNGMLQRSGRS
SNVSTALRLLGANVELFGVLTRNPTYRMILDDLEQRGIDISHCTFTDASP
PFSTIVQDRWTRRCTVVYCDKSFPYVTAADFRKLDLDQYGWVNFEARSPR
ETCDMIRLILDHNNGRDERDRIVVSLQIFNSFEQVVHLIAMCDYVFVTKY
IAESRGWKSPLEACEGVNALLRMPRNIRIRRPCIIVPWSSLGAGCMTTEG
EYFEVPAHKPKKIIDRVGDSDCFTAGFIYAAFVRQRRLAEAVDFANAVAS
YKLGYVGFDCLGHLPIDAVKLPVRMRCGSEVSSDDEDNGDQLNSCKKHLL
RPIEFLPEKSSIAPTEKEVPIETSQLSS*

BS23839.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-PA 378 CG12289-PA 1..378 1..378 2005 100 Plus
CG7328-PA 306 CG7328-PA 4..304 10..316 633 42 Plus
CG7551-PB 322 CG7551-PB 15..316 11..314 572 36.2 Plus
CG7335-PA 372 CG7335-PA 33..367 13..319 321 27.1 Plus