Clone BS23843 Report

Search the DGRC for BS23843

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:238
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG10597-RB
Protein status:BS23843.pep: gold
Sequenced Size:655

Clone Sequence Records

BS23843.complete Sequence

655 bp assembled on 2011-01-27

GenBank Submission: KX800538

> BS23843.complete
GAAGTTATCAGTCGACATGAAGGTCTTTGTGTGCTTGTTGGCTTCCCTGG
CTCTGGCCAACGCCGGTGGCCTCCGAGGCGGTGCAGGAGGCGGCTATCTG
CCCGGCGGAGGACGTGGTGGTGGCGGCGGAGGATTCGGTGGCCGCCCGGC
TATTGGAGCTGGCCTGGTGTCCCACGTCTCGCAGTCGCAGGGCAACACTA
AGGTCCACATTGGTGGTGGTTCCGCCGGCGGTGCTGGTGCTTATGGCGGC
GGTGCTGCCTCGTACGGCGGTGGAGCTGGTGCTGCCTATGGAGGTGGTGC
TGGAGCTTCCTACGGCGGTGGTGCAGCCTCTTATGGCGGTGGACGCGGAT
CTGGTGGATGGCAAGGAGCTGGAGCTGGAGCTGGTCGTGGTGGTGCTGGA
GGAGCTGGTGGCTGGCAAGGTGCTGGAGCAGGTCGTGGTGGAGCAGGAGG
CTGGCAGGGTGGTGCCGGAGGTGCTGGAGCTGGCAACGCCTGGGGTAACC
CCGCTGAGTTCGATTACACTGTCAACCACGCTTCCGGAGGTGCTGGTGGT
GCAGGTGGGGCCTACGGTGGTGCTGCTGGTGGTGGCTCCCGCGGCGGTGC
CGGCTGGTGGAACGATTAAAAGCTTTCTAGACCATTCGTTGGGCGCGCAA
AAGGG

BS23843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10597-RB 603 CG10597-PB 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10597-RB 708 CG10597-RB 47..649 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17230334..17230933 619..20 3000 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:50:10 has no hits.

BS23843.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:08 Download gff for BS23843.complete
Subject Subject Range Query Range Percent Splice Strand
CG10597-RB 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:45 Download gff for BS23843.complete
Subject Subject Range Query Range Percent Splice Strand
CG10597-RB 47..649 17..619 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:48 Download gff for BS23843.complete
Subject Subject Range Query Range Percent Splice Strand
CG10597-RB 47..649 17..619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:48 Download gff for BS23843.complete
Subject Subject Range Query Range Percent Splice Strand
X 17230334..17230935 17..619 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:45 Download gff for BS23843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17124367..17124968 17..619 99   Minus

BS23843.pep Sequence

Translation from 16 to 618

> BS23843.pep
MKVFVCLLASLALANAGGLRGGAGGGYLPGGGRGGGGGGFGGRPAIGAGL
VSHVSQSQGNTKVHIGGGSAGGAGAYGGGAASYGGGAGAAYGGGAGASYG
GGAASYGGGRGSGGWQGAGAGAGRGGAGGAGGWQGAGAGRGGAGGWQGGA
GGAGAGNAWGNPAEFDYTVNHASGGAGGAGGAYGGAAGGGSRGGAGWWND
*

BS23843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10597-PB 200 CG10597-PB 1..200 1..200 1102 100 Plus
Cpr47Ef-PD 601 CG13214-PD 272..460 14..195 349 47.3 Plus
Cpr47Ef-PC 612 CG13214-PC 272..460 14..195 349 47.3 Plus
CG17108-PA 342 CG17108-PA 83..296 17..197 345 39.8 Plus
Cpr47Ef-PD 601 CG13214-PD 230..406 11..197 343 41.8 Plus
Cpr47Ef-PD 601 CG13214-PD 252..426 17..196 343 44 Plus
Cpr47Ef-PC 612 CG13214-PC 230..406 11..197 343 41.8 Plus
Cpr47Ef-PC 612 CG13214-PC 252..426 17..196 343 44 Plus
Cpr47Ef-PC 612 CG13214-PC 342..535 18..197 338 45.2 Plus
Cpr47Ef-PD 601 CG13214-PD 342..524 18..197 334 44.6 Plus
Cpr47Ef-PC 612 CG13214-PC 318..490 17..195 324 44.6 Plus
Cpr47Ef-PC 612 CG13214-PC 353..521 17..196 323 45 Plus
Cpr47Ef-PD 601 CG13214-PD 353..542 17..196 322 44.4 Plus
CG17108-PA 342 CG17108-PA 1..233 1..196 320 37.3 Plus
CG5172-PD 172 CG5172-PD 8..172 3..198 320 42.1 Plus
Cpr47Ef-PD 601 CG13214-PD 374..562 17..196 319 43.8 Plus
Cpr47Ef-PC 612 CG13214-PC 374..540 17..196 316 44.2 Plus
Cpr47Ef-PD 601 CG13214-PD 318..510 17..196 312 43.8 Plus
CG17108-PA 342 CG17108-PA 136..326 16..195 311 41.4 Plus
Cpr47Ef-PC 612 CG13214-PC 388..573 17..196 308 43.3 Plus
CG17108-PA 342 CG17108-PA 164..330 22..195 306 41.1 Plus
Cpr47Ef-PD 601 CG13214-PD 407..575 18..192 299 47.5 Plus
Cpr47Ef-PC 612 CG13214-PC 407..586 18..192 294 44.8 Plus
Cpr47Ef-PD 601 CG13214-PD 433..589 16..196 252 38.7 Plus
Cpr47Ef-PC 612 CG13214-PC 439..600 17..196 244 39.5 Plus
CG17108-PA 342 CG17108-PA 197..342 10..184 238 35.7 Plus
CG17108-PA 342 CG17108-PA 20..140 66..199 203 39.7 Plus
Cpr47Ef-PD 601 CG13214-PD 440..595 17..162 203 40.3 Plus
Cpr47Ef-PD 601 CG13214-PD 30..115 87..182 185 47.9 Plus
Cpr47Ef-PC 612 CG13214-PC 30..115 87..182 185 47.9 Plus
Cpr47Ef-PD 601 CG13214-PD 39..113 66..145 172 46.2 Plus
Cpr47Ef-PC 612 CG13214-PC 39..113 66..145 172 46.2 Plus
Cpr47Ef-PD 601 CG13214-PD 94..292 18..196 169 29.8 Plus
Cpr47Ef-PC 612 CG13214-PC 94..292 18..196 169 29.8 Plus
Cpr47Ef-PD 601 CG13214-PD 32..114 23..132 166 41.8 Plus
Cpr47Ef-PC 612 CG13214-PC 32..114 23..132 166 41.8 Plus
Cpr47Ef-PD 601 CG13214-PD 31..115 69..158 162 42.1 Plus
Cpr47Ef-PD 601 CG13214-PD 35..117 68..155 162 48.3 Plus
Cpr47Ef-PC 612 CG13214-PC 31..115 69..158 162 42.1 Plus
Cpr47Ef-PC 612 CG13214-PC 35..117 68..155 162 48.3 Plus
Cpr47Ef-PD 601 CG13214-PD 32..131 14..132 147 39.5 Plus
Cpr47Ef-PC 612 CG13214-PC 32..131 14..132 147 39.5 Plus