Clone BS23874 Report

Search the DGRC for BS23874

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:238
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG31008-RA
Protein status:BS23874.pep: full length peptide match
Sequenced Size:377

Clone Sequence Records

BS23874.complete Sequence

377 bp assembled on 2011-01-27

GenBank Submission: KX805505

> BS23874.complete
GAAGTTATCAGTCGACATGCCACGCAAACAGAGAAGTGCTTCGGTCAAAG
CAGGCTCTACAAACTATATGCCTGCGGTGGTGCCCACCGTCACGAATTCC
GAAATGGTCTTCAAGGAAGCGGCTGCCCACGCAGTGGGCGTGGCAGCAGG
ATCAGTCGTGGGTCATGCCATCGGATCAGGAATAACGGGGCTATTCAGGC
GGCGTGACCAGCAGCCGCACCACAGCGATTTAGTCGAAGAAGGTCCTTGC
GCCAAGGAAATGAAGGAGTTCTTGAAGTGCACCGAGGACAATGACGATCT
CAGTGTGTGCAAGGAGTTCAACGATGCTGTGCGACGATGCCACCGCCAGT
ACAATATTTAGAAGCTTTCTAGACCAT

BS23874.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31008-RA 345 CG31008-PA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31008-RA 529 CG31008-RA 91..435 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30989572..30989916 361..17 1725 100 Minus
Blast to na_te.dros performed 2014-11-26 16:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 5260..5347 376..289 134 61.4 Minus

BS23874.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:28 Download gff for BS23874.complete
Subject Subject Range Query Range Percent Splice Strand
CG31008-RA 91..435 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:32 Download gff for BS23874.complete
Subject Subject Range Query Range Percent Splice Strand
CG31008-RA 91..435 17..361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:33 Download gff for BS23874.complete
Subject Subject Range Query Range Percent Splice Strand
CG31008-RA 91..435 17..361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:33 Download gff for BS23874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30989572..30989916 17..361 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:32 Download gff for BS23874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26815294..26815638 17..361 100   Minus

BS23874.pep Sequence

Translation from 16 to 360

> BS23874.pep
MPRKQRSASVKAGSTNYMPAVVPTVTNSEMVFKEAAAHAVGVAAGSVVGH
AIGSGITGLFRRRDQQPHHSDLVEEGPCAKEMKEFLKCTEDNDDLSVCKE
FNDAVRRCHRQYNI*

BS23874.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31008-PA 114 CG31008-PA 1..114 1..114 599 100 Plus
CG31007-PA 176 CG31007-PA 73..176 32..114 255 51 Plus
CG5010-PA 170 CG5010-PA 37..169 2..114 174 30.8 Plus
CG5010-PB 122 CG5010-PB 18..121 31..114 168 32.7 Plus