Clone BS23879 Report

Search the DGRC for BS23879

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:238
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG9589-RA
Protein status:BS23879.pep: full length peptide match
Sequenced Size:794

Clone Sequence Records

BS23879.complete Sequence

794 bp assembled on 2011-01-27

GenBank Submission: KX804008

> BS23879.complete
GAAGTTATCAGTCGACATGGGAGATCGCAACAAGCAGCCGGTTATTCTGC
TGAAGGTTCCGTCCTCCGATGATTTCTATGGTTCGGCGTTGCGCAGCCAT
AACCTGGATCCCATCTTCATTACTCCCTCGCATTTTGTGTTCAAGAATCT
GAAGCAATTGCAAGCCAAGTTGCATGAGCCGCACAAATATGCCGGGATTA
TATTTGCATCCCCGCGCTGTGTCCAAGCTGTAAACGAGGCACTAGGAAAG
ACACCACTTCCTAGTTGCTGGCGTGCGTTACACAATTATTCCCTAGGCAA
GAACACGCACAGCGCCGCCTGGATAACATTCCAGAATCTTCCGACTCTGG
GCGATCATGCCGTGAATGCAAACAATCTGTGCGATCTGATCGTGGAGACG
TTTGGACCCAAGAGGGATCTGCCACTGCTCATGCCCTGCGGCAATGGCGT
GGGTCAGACACTGCGCCTCCGTTTGGTCGCCCAGGGATTCCGGGTGGATG
CCTGCGAAGTGTACGAGAGTCGGTCGCATCCGGATTTCGTCAATCAGATG
CGGCACGCCCTCAAATTCAAGCGAATGGAAACGATTGTGTTCTTCGGACC
CTCCAGTGTCCGCAGCTCCTTGGAGTTCTTTGGGAACTACAACGTTTCGC
TTAAGGATCGCAAGCTGATAGCCGTGGGCAGTGGCACCAGGAAGGCAATG
GAGGAATCTGGAATTAAGGCGGACGGAGTCGTGAATGCTGCTGACGTCGA
CCGCCTGATAAATATCATCAAAACATAGAAGCTTTCTAGACCAT

BS23879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-RA 762 CG9589-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-RA 974 CG9589-RA 83..845 16..778 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15788603..15789365 16..778 3815 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:01:33 has no hits.

BS23879.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:27 Download gff for BS23879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 84..845 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:28 Download gff for BS23879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 84..845 17..778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:30 Download gff for BS23879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 84..845 17..778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:30 Download gff for BS23879.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15788604..15789365 17..778 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:28 Download gff for BS23879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11614326..11615087 17..778 100   Plus

BS23879.pep Sequence

Translation from 16 to 777

> BS23879.pep
MGDRNKQPVILLKVPSSDDFYGSALRSHNLDPIFITPSHFVFKNLKQLQA
KLHEPHKYAGIIFASPRCVQAVNEALGKTPLPSCWRALHNYSLGKNTHSA
AWITFQNLPTLGDHAVNANNLCDLIVETFGPKRDLPLLMPCGNGVGQTLR
LRLVAQGFRVDACEVYESRSHPDFVNQMRHALKFKRMETIVFFGPSSVRS
SLEFFGNYNVSLKDRKLIAVGSGTRKAMEESGIKADGVVNAADVDRLINI
IKT*

BS23879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-PA 253 CG9589-PA 1..253 1..253 1327 100 Plus
CG1885-PB 277 CG1885-PB 1..253 1..251 513 41.9 Plus
CG1885-PA 277 CG1885-PA 1..253 1..251 513 41.9 Plus