BS23892.complete Sequence
1511 bp assembled on 2011-02-04
GenBank Submission: KX802984
> BS23892.complete
GAAGTTATCAGTCGACATGCGCACAGTGCTGTTGAGCAAACACGACGAGC
TGTACCTGGAGAAATGCGCACAGGAGAACCAGTTCTCGTACGGGATAATC
GTGGGCCATCAAGCGGATCTCACCAAGAGCGTGGTGGTCCACCTGGCCAG
GAACAACGAGGAGGATGCGGATCTGGAGGACCTGTCGGAGGTCCGGCTCA
CCATCTCGGACATCAACTCACAGGCATTGGCCTCCCAGTGGCTGAGCGCC
AGCAAAATGTGTCCCGGATCTTTTGACGTCATCGGAATCTTTGTGTCTTC
AGTAAGATCCGATGTAGTAAACGAACAGAGCGCCGAATTTAAGAATGCCA
AAAAGCTGTTTTCAGATATTTACGATTTGCTCCTGAAAAGCAACAGCTCG
TTTGGCGTCTACACCACCGACATTGCACAGACTGATTTCGTATTCCTCTC
GTATTCGCTGGCCGACAAGAAAGTGCTCTGCAAGAACTACAGCTATGGCA
ACGGCGGCACTTTCACCAATATGGAGTTCCGGTTTGTGGACAAACCCTTC
GAGTGGATTCAGCTGGAGTGCAGCTACGATTTCGATGATGTGCTGCCCAT
ACTGGACTCCTCGCGTCGCGTCAACATCGAAGACCAGTTCCAGAGTATGA
TAGTGTCGGTGCGCAAGAACCTGCTCGCCAGTGAAGTATTCCTCCAAAAC
GAAGTTGTCGAGGACACCATCGATCTGCAGGCCTATATCAAAAAGAAAAA
GACGAAAGTGGACAAGCTGCAACCGACATCGACAACAGGTGGCACGGCCA
CTGCCTCGAGCAACACCACTGACTCCCTGCCGCGGCTTGCGTCCGAAGGA
ATCATCGGAGGCACTGAAACCATCCGGGCGAGCATCGTGCTCCCCATGAA
ATGCCAGCTGAGCAAACCGACGGACATCAAGGTGCGCGAATTTAGTGGCA
CGCTGCACATGAGCGGCATTATTACCTCAAAGGTATTCTGCAATCCTCGA
AACAGTATAGCAGATGTTAAGCGTTTCCTACGCGACGATGTGCTCCGTTC
GCTGATAACGCGTATACAAGTGTACTGCGATGGACTCACCGATCCATATG
TGACCAATGAAGCTCTGTACATTAGTGAGCCGCCGAGACGTGTGTTCTTC
AGCCTGCCTTCAGAGGGTCCCAGTGCGTCGGTCGGAGCAGTAGTTCAGTT
TTCCGAGTACTTATTCCGTGGCGAGGCACCAACTGTTGTGGTGGCCCAGG
CTAAACAGATTCTGGACGTGGATCTAGATCCAGAGACCATATCCGTGGAG
GCAGAGGGACTCCCGGATGATACGCACTTCAACAATTGCAAGATGGACGC
TGATTGCATAGACGATTCTGGGATTATGACCAGTTCGATGCCAAAGCCGG
AACTTTCGCGCAGCCTTTACATGGTGGGAATCGCAGTGGCCCTGCTGGTC
CTCCTGTCCTCCGTGGCACTTCACTTTGTCCTAGCCGAGCGGTAGAAGCT
TTCTAGACCAT
BS23892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10616-RC | 1479 | CG10616-PC | 1..1479 | 17..1495 | 7395 | 100 | Plus |
| CG10616-RA | 1479 | CG10616-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
| CG10616-RB | 1527 | CG10616-PB | 534..1527 | 502..1495 | 4970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10616-RC | 1838 | CG10616-RC | 110..1588 | 17..1495 | 7395 | 100 | Plus |
| CG10616-RA | 1689 | CG10616-RA | 110..1588 | 17..1495 | 7395 | 100 | Plus |
| CG10616-RB | 1737 | CG10616-RB | 643..1636 | 502..1495 | 4970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12473185..12474178 | 502..1495 | 4970 | 100 | Plus |
| 3L | 28110227 | 3L | 12472022..12472197 | 110..285 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 12472707..12472832 | 376..501 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 12471837..12471929 | 17..109 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 12472546..12472637 | 284..375 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:11:12 has no hits.
BS23892.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:42 Download gff for
BS23892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 114..1592 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:28 Download gff for
BS23892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 110..1588 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:17 Download gff for
BS23892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 110..1588 | 17..1495 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:17 Download gff for
BS23892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12472547..12472637 | 285..375 | 100 | -> | Plus |
| 3L | 12472707..12472832 | 376..501 | 100 | -> | Plus |
| 3L | 12472022..12472196 | 110..284 | 100 | -> | Plus |
| 3L | 12471837..12471929 | 17..109 | 100 | -> | Plus |
| 3L | 12473185..12474178 | 502..1495 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:28 Download gff for
BS23892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12464937..12465029 | 17..109 | 100 | -> | Plus |
| arm_3L | 12465122..12465296 | 110..284 | 100 | -> | Plus |
| arm_3L | 12465647..12465737 | 285..375 | 100 | -> | Plus |
| arm_3L | 12465807..12465932 | 376..501 | 100 | -> | Plus |
| arm_3L | 12466285..12467278 | 502..1495 | 100 | | Plus |
BS23892.pep Sequence
Translation from 16 to 1494
> BS23892.pep
MRTVLLSKHDELYLEKCAQENQFSYGIIVGHQADLTKSVVVHLARNNEED
ADLEDLSEVRLTISDINSQALASQWLSASKMCPGSFDVIGIFVSSVRSDV
VNEQSAEFKNAKKLFSDIYDLLLKSNSSFGVYTTDIAQTDFVFLSYSLAD
KKVLCKNYSYGNGGTFTNMEFRFVDKPFEWIQLECSYDFDDVLPILDSSR
RVNIEDQFQSMIVSVRKNLLASEVFLQNEVVEDTIDLQAYIKKKKTKVDK
LQPTSTTGGTATASSNTTDSLPRLASEGIIGGTETIRASIVLPMKCQLSK
PTDIKVREFSGTLHMSGIITSKVFCNPRNSIADVKRFLRDDVLRSLITRI
QVYCDGLTDPYVTNEALYISEPPRRVFFSLPSEGPSASVGAVVQFSEYLF
RGEAPTVVVAQAKQILDVDLDPETISVEAEGLPDDTHFNNCKMDADCIDD
SGIMTSSMPKPELSRSLYMVGIAVALLVLLSSVALHFVLAER*
BS23892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10616-PC | 492 | CG10616-PC | 1..492 | 1..492 | 2487 | 100 | Plus |
| CG10616-PA | 492 | CG10616-PA | 1..492 | 1..492 | 2487 | 100 | Plus |
| CG10616-PB | 508 | CG10616-PB | 1..508 | 1..492 | 2454 | 96.7 | Plus |
