Clone BS23902 Report

Search the DGRC for BS23902

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:239
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG31274-RB
Protein status:BS23902.pep: full length peptide match
Sequenced Size:875

Clone Sequence Records

BS23902.complete Sequence

875 bp assembled on 2011-01-28

GenBank Submission: KX800792

> BS23902.complete
GAAGTTATCAGTCGACATGTCTGGAACATCGACCTCTGAACGCTCCAACT
CCGAAGACAGCCCGTTGAATCCCTGCCTAACGGAGGTCCTCAGGAATTGT
GCCAACATTCAGTCGCTGGAGAGCTTGAACTACGAATATAACGACGTTTT
GCTGACCGAAGACAACGTGGGGAAGATGATTACGCCGAATCCGTATTCCT
TTAGTGGCAACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTT
TCGGAAAGCATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAA
CCTGAAGACAATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCA
AGTTTCTCGATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCC
TTTTTCGAGGATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGA
CATAAACACTTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACA
ATTGCGATATAGCAAATATAACCGATTGGATACACCGCATCGAACGGCAC
TGTCCTGCGCTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCAC
AGTTTTCGGGGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCC
AGCTAAAATATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCG
ACGCTGTCTTCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGA
AAAGCCTCCACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAA
AGTATTCCAGAAAATCGCACAGCGGACGGATGTTTGGCAACGGCTCCTCC
ACAAACTGAAAGCTTTCTAGACCAT

BS23902.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-RB 843 CG31274-PB 1..843 17..859 4215 100 Plus
MESK4-RB 843 CG31447-PB 1..843 17..859 4215 100 Plus
MESK4-RA 843 CG31447-PA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-RB 1399 CG31274-RB 122..965 17..860 4220 100 Plus
MESK4-RB 1488 CG31447-RB 112..955 17..860 4220 100 Plus
MESK4-RA 1390 CG31447-RA 112..955 17..860 4220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16989020..16989455 58..493 2180 100 Plus
3R 32079331 3R 16993232..16993667 58..493 2180 100 Plus
3R 32079331 3R 16989518..16989886 492..860 1845 100 Plus
3R 32079331 3R 16993730..16994098 492..860 1845 100 Plus
3R 32079331 3R 16988925..16988968 17..60 220 100 Plus
3R 32079331 3R 16993137..16993180 17..60 220 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:02:05 has no hits.

BS23902.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:29 Download gff for BS23902.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 96..937 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:42 Download gff for BS23902.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 112..953 17..858 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:43 Download gff for BS23902.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 112..953 17..858 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:43 Download gff for BS23902.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16988925..16988968 17..60 100 -> Plus
3R 16989023..16989454 61..492 100 -> Plus
3R 16989519..16989884 493..858 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:42 Download gff for BS23902.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12814647..12814690 17..60 100 -> Plus
arm_3R 12814745..12815176 61..492 100 -> Plus
arm_3R 12815241..12815606 493..858 100   Plus

BS23902.pep Sequence

Translation from 16 to 858

> BS23902.pep
MSGTSTSERSNSEDSPLNPCLTEVLRNCANIQSLESLNYEYNDVLLTEDN
VGKMITPNPYSFSGNISISSCPSEDVSFSESILEDNGRISLAYENLKTIP
RRLADKFAAQTKFLDLSHNDFRNLRFLSFFEDLDTLILDRNVNLDINTFP
YLPSLRILWINNCDIANITDWIHRIERHCPALDQLSCMGNPGIRTVFGGQ
GPREYILQVLPQLKYLDGLPTSRNAAYATLSSSQGQGPDSTSNSEKPPLA
SAFTFKDIIRPKYSRKSHSGRMFGNGSSTN*

BS23902.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-PB 280 CG31274-PB 1..280 1..280 1466 100 Plus
MESK4-PB 280 CG31447-PB 1..280 1..280 1466 100 Plus
MESK4-PA 280 CG31447-PA 1..280 1..280 1466 100 Plus
CG31076-PB 182 CG31076-PB 7..153 85..217 162 32.4 Plus