BS23905.complete Sequence
2021 bp assembled on 2011-02-16
GenBank Submission: KX806104
> BS23905.complete
GAAGTTATCAGTCGACATGCAGTATAGTCACACTCGCATCTCAGACTGGA
CTTGCATTAAGTGTGGTGCCAGCAACTTTAAGCGCCGCTTCCAATGCTAC
ATGTGCAATGCGTCGCGGGCGGAGAGCGAGAATGCTCTTTACGGAGCCGG
CGAGGGCGTCGACGAGATCAGCCAAATCCTCACAAAAAAGATCATGCTTC
GCGGCTTGGACGCGCTGACAAACGAGGAGGGCGTGCTAACTGCCCTTCAG
CAGCGCCTGCCCGAACTGGCCAAAACAGTCAGCAAGGTGCTGGTCAGTCG
CGACGCCCTAACCAATGCATCTCGGGGCATTTGCTACCTCAATTTTGACA
CACTCATTGATTCTATGAACGTGTTCAACGGGCTGACGGCGTTGGATCCG
CCACTCACTCTGGACGACAAAACAGTTATCGTCACCTACTGCATTGACTC
CGAAAACCGTCAAATGATGCCAGCCGAAGGCAACTTTTTTAGAGCAGGTG
AAACAGCGATGTCTCCGTCGGCCATTACGGCGGCCTACACTTTGGCGGAT
GTGCCTCGTCTTGCGGAGTACAGTGCATCCGTGTATGCCTCGAATCCGTT
GGAGCATGCTAACTACGTCCAGTACTATACGGATTATTACACGACTGAAA
TAAGCAAGAACTGCAGAGATCGTCAAGTGACGGAGGCCAACTCCGGCGCT
GCCGTTGCTCTCTCGGCCATCCAGCGCAAGCAACGGAAGGTCAGCCAGAT
GGAGACCACGGTTTCGGTGACAGAGGCGAAGGTCGCCTTCCTTGCCAGGG
GTGAAAGTGCTCCCAAGGGGAATGATGGCAAGAAATACGATACTCCCGAT
GTGTCCAAGTACCAGTACGACGAGACCTCCGGCTACTACTACGACCACGT
TACAGGACTCTACTATGATGCCCACTCGCAGTACTACTACAACAACGAGA
CGGGCGCGTATTTGTACTGGGATCAGAAGCGGAGCACCTATGTGCTGGCC
ACACCCGCTTCCACTCAGGCAGCCCTCAAGGAAGTATTAGCCGATGCCGA
GAAAAAGGAGGAGGAGGCCAAAAAGGCAAAGGAGAAGGAAAAAGAAAAGG
AGGAAGCTGGGGGGAAGCCCGACAAGGTGAAGGTGGCCAAGAAGATCGTC
AAGGACATGGAGAAGTGGGCCAAGCAGCTAAACCAAAAAAAGGACTACAC
AGCAGTGGCAACGCCGCAGCCTATCCTGTCGGATACTGAGGCGGCCACCA
CCTCCCGTGCTTCCCAAGGGGCATATGCTGATGTGGGATTCTCAATCCTT
GAGAAGAAGGAGCTTGGCAAGCTCAACGACTATGTACCGGAGGCAGGACC
TCCAGCGATAAGCAAATTGGTTGGTGCTTATGGAGGACCTTCTGACTCGG
AAGATGATAATAGTGCCAATCAGAAAGCACTTGAAGCTAGCGTTGGGACT
AAACGAGCCATTAGCGATGAATCTGACTACGTGGACTTCCAAAAACTTAC
TTGCCTGCTCTGCATGCGTGCCTTCCAATCGCTGGACATCTTGCAGAAGC
ATTTGAAAATGTCGAATCTACACAAGGAGAATCTGGACAAGCTTAAACGG
AATCCCGCAGTTGAGGCTGGCACGGATGAGGGTCTATCCTATCGTGATCG
TGCCAAGGAACGCAGGCTGAAGTACGGTGAGAGCGATCCTCCTCCACCAA
ATAGGAGCCGGGAGCGTTTCGAGCAAGAGATAAAGACTTTGCAGTCGCGC
CAGAAGGATTCTTTTGGCGCCACTGCAGCCATGCCCATCAGTTCGACCAA
CGTGGGCAGCCGCCTGATGCAGAAGATGGGCTGGTCGGAGGGCCAGGGAC
TGGGCAAAAAGAACCAGGGACGCACCGAGATCATAGAGGCTGATGGTCGT
TCTAACAACGTGGGGCTGGGCAACAACACTGGCCATATGGCGCCTGGGAA
CGACTACAAATCCTACATCAAAAAGATGATGAAGCAGCGTTATGAGAACG
CCTGAAAGCTTTCTAGACCAT
BS23905.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4896-RK | 2844 | CG4896-PK | 855..2844 | 16..2005 | 9950 | 100 | Plus |
| CG4896-RD | 2850 | CG4896-PD | 861..2850 | 16..2005 | 9950 | 100 | Plus |
| CG4887-RB | 3015 | CG4887-PB | 2494..3015 | 1478..2005 | 1190 | 82.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4896-RI | 3118 | CG4896-RI | 961..2950 | 16..2005 | 9950 | 100 | Plus |
| CG4896-RG | 3781 | CG4896-RG | 1624..3613 | 16..2005 | 9950 | 100 | Plus |
| CG4896-RK | 3193 | CG4896-RK | 1036..3025 | 16..2005 | 9950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1180994..1181793 | 839..1638 | 4000 | 100 | Plus |
| 2L | 23513712 | 2L | 1180510..1180926 | 423..839 | 2085 | 100 | Plus |
| 2L | 23513712 | 2L | 1181855..1182105 | 1639..1889 | 1255 | 100 | Plus |
| 2L | 23513712 | 2L | 1180213..1180449 | 189..425 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 1176103..1176580 | 842..1334 | 960 | 81.5 | Plus |
| 2L | 23513712 | 2L | 1176942..1177192 | 1639..1889 | 820 | 88.4 | Plus |
| 2L | 23513712 | 2L | 1179995..1180123 | 60..188 | 645 | 100 | Plus |
| 2L | 23513712 | 2L | 1182168..1182286 | 1887..2005 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 1175712..1175937 | 535..760 | 350 | 77 | Plus |
| 2L | 23513712 | 2L | 1176727..1176842 | 1478..1593 | 340 | 86.2 | Plus |
| 2L | 23513712 | 2L | 1179892..1179937 | 16..61 | 230 | 100 | Plus |
| 2L | 23513712 | 2L | 1175287..1175517 | 189..419 | 210 | 72.7 | Plus |
| 2L | 23513712 | 2L | 1177275..1177372 | 1908..2005 | 205 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:15:18 has no hits.
BS23905.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:15 Download gff for
BS23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RE | 1595..3582 | 17..2004 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:03 Download gff for
BS23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RG | 1625..3612 | 17..2004 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:45 Download gff for
BS23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RK | 1037..3024 | 17..2004 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:45 Download gff for
BS23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1180513..1180926 | 426..839 | 100 | -> | Plus |
| 2L | 1179893..1179937 | 17..61 | 100 | -> | Plus |
| 2L | 1179997..1180123 | 62..188 | 100 | -> | Plus |
| 2L | 1180213..1180449 | 189..425 | 100 | -> | Plus |
| 2L | 1180995..1181793 | 840..1638 | 100 | -> | Plus |
| 2L | 1181855..1182104 | 1639..1888 | 100 | -> | Plus |
| 2L | 1182170..1182285 | 1889..2004 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:03 Download gff for
BS23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1179893..1179937 | 17..61 | 100 | -> | Plus |
| arm_2L | 1179997..1180123 | 62..188 | 100 | -> | Plus |
| arm_2L | 1180213..1180449 | 189..425 | 100 | -> | Plus |
| arm_2L | 1180513..1180926 | 426..839 | 100 | -> | Plus |
| arm_2L | 1180995..1181793 | 840..1638 | 100 | -> | Plus |
| arm_2L | 1181855..1182104 | 1639..1888 | 100 | -> | Plus |
| arm_2L | 1182170..1182285 | 1889..2004 | 100 | | Plus |
BS23905.pep Sequence
Translation from 16 to 2004
> BS23905.pep
MQYSHTRISDWTCIKCGASNFKRRFQCYMCNASRAESENALYGAGEGVDE
ISQILTKKIMLRGLDALTNEEGVLTALQQRLPELAKTVSKVLVSRDALTN
ASRGICYLNFDTLIDSMNVFNGLTALDPPLTLDDKTVIVTYCIDSENRQM
MPAEGNFFRAGETAMSPSAITAAYTLADVPRLAEYSASVYASNPLEHANY
VQYYTDYYTTEISKNCRDRQVTEANSGAAVALSAIQRKQRKVSQMETTVS
VTEAKVAFLARGESAPKGNDGKKYDTPDVSKYQYDETSGYYYDHVTGLYY
DAHSQYYYNNETGAYLYWDQKRSTYVLATPASTQAALKEVLADAEKKEEE
AKKAKEKEKEKEEAGGKPDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATP
QPILSDTEAATTSRASQGAYADVGFSILEKKELGKLNDYVPEAGPPAISK
LVGAYGGPSDSEDDNSANQKALEASVGTKRAISDESDYVDFQKLTCLLCM
RAFQSLDILQKHLKMSNLHKENLDKLKRNPAVEAGTDEGLSYRDRAKERR
LKYGESDPPPPNRSRERFEQEIKTLQSRQKDSFGATAAMPISSTNVGSRL
MQKMGWSEGQGLGKKNQGRTEIIEADGRSNNVGLGNNTGHMAPGNDYKSY
IKKMMKQRYENA*
BS23905.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4896-PK | 947 | CG4896-PK | 286..947 | 1..662 | 3417 | 100 | Plus |
| CG4896-PD | 949 | CG4896-PD | 288..949 | 1..662 | 3417 | 100 | Plus |
| CG4887-PB | 1004 | CG4887-PB | 332..1004 | 1..662 | 2430 | 71.4 | Plus |
| CG4887-PA | 1004 | CG4887-PA | 332..1004 | 1..662 | 2430 | 71.4 | Plus |
