BS23906.complete Sequence
1367 bp assembled on 2011-02-03
GenBank Submission: KX802450
> BS23906.complete
GAAGTTATCAGTCGACATGCGACTGGCACAACGTTACGGAATTGCACTGG
TTGCGCTGCTTATGGTTGGGGCGACCGTATTGTTCTTCTGGTCGGAAAAT
ATCATTAACTACGAAAACATCAAGTTCAACAGTCCTGTGGAGCTGGTCTG
GTGGTCCAGGGATATGTCCTGGAATTACGACGTGCAGCGCCAGTGCGGAA
TTCATACTTGCCGCATCACCAACAAGCGGAGCCGCCGTCCGTGGGCCCGG
GGCGTCCTGTTTTACGGCTCAAACATAAAGACGGGAGACTTTCCCCTGCC
TCGGAACGAGCACCAAATCTGGGCCCTACTGCATGAAGAATCACCAAGGA
ACACCCCTTTTGTGTCCAATAAAGAGTTCCTTCGCCACTTCCATTTCACA
TCCACGTTTAGCCGCTACAGCAACTTGCCGCTGACTACGATGTACTTGCC
CAGTGGCGAGGCGCTTACTTCGAAGGATTACTATGTTACGTTTGACGGCA
AGTCAAAGTACGGATACCGTCCATCCACATCGGTGGTGTTCCTCCAAAGC
GACTGCGACACGATGTCTGGAAGGGAGGACTACGTAAAGGAACTGATGAA
ACATCTTCCGATCGATTCCTACGGCAGCTGCCTACGGAATAGAGATCTGC
CAGAGAGCTTGCAGAAGGATTACTTGAATAATTTATATTCACCGGAGTTG
CTGCGTTTCCTGTCCGAATACAAGTTCATGATTGCCATTGAGAACGCTGC
CTGTCCGGATTATATTACCGAAAAGTTTTGGCGTCCTTTGATAATGGGAG
TTATTCCAATTTACTTTGGCTCACCCACCATAAAAGACTGGGAACCGAAT
AATAAATCTGCAATTTTTGTGAACGACTTTCAAAATCCTCAGGCATTGGT
AGAGTATCTCAATAAGTTGGCGGATAACAAAAAGCTGTACAATTCGTACC
GCCAACACAAACTAAATCGGCGTAACCCCATTTCCAACAAAAAGCTACTC
CACAACCTTGTCACGCGCCAGTACCACATAGGCGATTCTTCTCCGGGAGC
ATCACTCTTTGAGAAGTTCGAGTGTGCAGTGTGCTACCATGTAATCAATA
CTGCCAGGAACGTGAAGGCCGACTTGCGTCATTACAATTGTCCCCTGGAA
CCGGTGTATGCTAAGATGGAGGGTCAGAAAATTCCTCAAAATGTCGCGGA
TTGGCGAGCCGCAATGGAGGTAGGCCAGTGCCAAGCTAAGGTACTCGATG
AGTTCTTCCGTCGAGACATCGGTTTCAATGACGCAGAGTTTGATGCTGAG
CTCAATCGGAGGATTGAGGGAAACAATTGCAGTAATAGTTCAAATACTTA
AAAGCTTTCTAGACCAT
BS23906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucTB-RD | 1335 | CG4435-PD | 1..1335 | 17..1351 | 6675 | 100 | Plus |
| FucTB-RA | 1335 | CG4435-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
| FucTB-RC | 624 | CG4435-PC | 1..624 | 728..1351 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucTB-RD | 1618 | CG4435-RD | 122..1457 | 16..1351 | 6680 | 100 | Plus |
| FucTB-RA | 1516 | CG4435-RA | 122..1457 | 16..1351 | 6680 | 100 | Plus |
| FucTB-RC | 1164 | CG4435-RC | 410..1105 | 656..1351 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9428830..9429345 | 1351..836 | 2580 | 100 | Minus |
| 2L | 23513712 | 2L | 9430023..9430430 | 657..250 | 2040 | 100 | Minus |
| 2L | 23513712 | 2L | 9430696..9430931 | 251..16 | 1180 | 100 | Minus |
| 2L | 23513712 | 2L | 9429411..9429591 | 836..656 | 905 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT4 | 1447 | Dbuz\BuT4 BUT4 1447bp | 1191..1276 | 935..849 | 117 | 60.9 | Minus |
BS23906.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:37 Download gff for
BS23906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucTB-RA | 100..1432 | 17..1349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:06 Download gff for
BS23906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucTB-RA | 123..1455 | 17..1349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:22 Download gff for
BS23906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucTB-RA | 123..1455 | 17..1349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:22 Download gff for
BS23906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9430023..9430429 | 251..657 | 100 | <- | Minus |
| 2L | 9430697..9430930 | 17..250 | 100 | | Minus |
| 2L | 9428832..9429345 | 836..1349 | 100 | <- | Minus |
| 2L | 9429412..9429589 | 658..835 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:06 Download gff for
BS23906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9430697..9430930 | 17..250 | 100 | | Minus |
| arm_2L | 9428832..9429345 | 836..1349 | 100 | <- | Minus |
| arm_2L | 9429412..9429589 | 658..835 | 100 | <- | Minus |
| arm_2L | 9430023..9430429 | 251..657 | 100 | <- | Minus |
BS23906.pep Sequence
Translation from 16 to 1350
> BS23906.pep
MRLAQRYGIALVALLMVGATVLFFWSENIINYENIKFNSPVELVWWSRDM
SWNYDVQRQCGIHTCRITNKRSRRPWARGVLFYGSNIKTGDFPLPRNEHQ
IWALLHEESPRNTPFVSNKEFLRHFHFTSTFSRYSNLPLTTMYLPSGEAL
TSKDYYVTFDGKSKYGYRPSTSVVFLQSDCDTMSGREDYVKELMKHLPID
SYGSCLRNRDLPESLQKDYLNNLYSPELLRFLSEYKFMIAIENAACPDYI
TEKFWRPLIMGVIPIYFGSPTIKDWEPNNKSAIFVNDFQNPQALVEYLNK
LADNKKLYNSYRQHKLNRRNPISNKKLLHNLVTRQYHIGDSSPGASLFEK
FECAVCYHVINTARNVKADLRHYNCPLEPVYAKMEGQKIPQNVADWRAAM
EVGQCQAKVLDEFFRRDIGFNDAEFDAELNRRIEGNNCSNSSNT*
BS23906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucTB-PD | 444 | CG4435-PD | 1..444 | 1..444 | 2399 | 100 | Plus |
| FucTB-PA | 444 | CG4435-PA | 1..444 | 1..444 | 2399 | 100 | Plus |
| FucTB-PC | 207 | CG4435-PC | 1..207 | 238..444 | 1117 | 100 | Plus |
| FucTA-PB | 503 | CG6869-PB | 164..439 | 31..315 | 252 | 29.5 | Plus |
| FucTA-PA | 503 | CG6869-PA | 164..439 | 31..315 | 252 | 29.5 | Plus |
