BS23908.complete Sequence
1487 bp assembled on 2011-02-03
GenBank Submission: KX802827
> BS23908.complete
GAAGTTATCAGTCGACATGTCGTCCTCTTTCTTCCTCAAGCCAGGCGCCA
AGGGCACCAAGAAGCGCAAGAATCCCGCAGCAACAACAAAAGGAAAACCG
CTTAAGAAAGGCGGAAAACCGGGTAAATCAACGCCCGCGGCTGGTGGACC
AGTGCCAAAGAAGCAGCGCCGTCCCAAGGAGGAGGACGAGGAGATAGCTA
GCGACGATGAGGAGTACAACAGCGATCTGGGCGGCGATGACAACACCTTG
GCATTTTCATCCGACGAGGGCGAGGAGGAAACGCCGCAGGACAAGCGCCT
GCGTCTGGCCAAACAGTATCTGTCGGAGATCGAGAAGCAAGAGGCGGAAC
GCGCCGAGGATCGGGAGCTGGCCCAAAGCGTGGAGCAGCGCTTGCAAACG
GAATACTTGGATAGCGTGGGCAAACTGCGCCGGAACATTGCTGGCAGCCT
GAAAGCCTGCGAATCGAGCCGCATCCTCAAGCACAAACTCCACCACACGC
CTATCTGTGCCCTTGCACTCAGTCCGGATGGTAAATTCCTCTACACGGGA
GCCAAATCGCAATTCCTACTTAAGTGGTGCACGGAAACGGGGAAGGTGCT
GGAGAAATCGGACGTGCTGTCGCATCGCGAGGAACCAGAAACGGGCAAGA
AAAGGCGATCGCATGTCATCAGCATATGCCTGTCCTCGGACATGAAGTAT
CTGGCCTTGGCCGAAGGTGGTCCACACATTCAAATTTGGTGTCCCCAGAC
GATGAAGCACATTAAGACTCTTAAAGGCCACCGGGATAGTGTGGCAGGTC
TGGTCTTTCGCAAAGGCACACATGACTTGTACTCGGCAGCCAAGGATCGA
TCGGTGAAAATCTGGTCCCTGGATGAGATGGCCTATGTGGAGAGTTTATT
CGGTCACCAAACGGCAGTAACTAGCATAGATGCACTGAGTCGAGAGCGCG
CCATTACCGCTGGCGGTTCGGATTGCTCCTTGCGCATTTGGAAGATCACA
GAGGAATCGCAGCTGATCTACAATGGACACAAAGATAGCATTGAGTGCGT
TAAGTACATCAACGATGAGCATTTTGTGTCTGGTGGCATGGATGGAGCAA
TCGGTTTATGGAGCGCTTTGAAAAAGAAGCCCATTTGTACAACGCAACTG
GCGCACGGAGTGGGCGAGAATGGCGTGGCCAACTGGATAACCGCCATTGC
TGTGGTGGTCAACACGGATTTAGTGGCAACAGGTTCTTGTGACGGTTGCG
TCCGTCTTTGGCAGACTAATCCCAACGCGCGTAAAATGAACCTAATCCAG
AGCATATCCATCGCCGGCTTCATCAACGGACTGGCTTTCAATGCCGATGG
CAGCAAGCTGTTTGTGGCCACCGGACAGGAGCACCGCCTGGGTCGCTGGT
GGCGACTCAAGGAGGCAAAAAACCAAGTAGTTGTACTCGACGTTAAGTTA
CAGAGCGCGGCCAGCAGTTAGAAGCTTTCTAGACCAT
BS23908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U3-55K-RA | 1455 | CG33505-PA | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U3-55K-RA | 1690 | CG33505-RA | 120..1574 | 17..1471 | 7275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14859709..14860537 | 897..69 | 4145 | 100 | Minus |
| 2R | 25286936 | 2R | 14858961..14859201 | 1471..1231 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 14859450..14859647 | 1095..898 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 14859254..14859393 | 1234..1095 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 14860586..14860639 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:07:40 has no hits.
BS23908.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:35 Download gff for
BS23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U3-55K-RA | 107..1561 | 17..1471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:43 Download gff for
BS23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U3-55K-RA | 120..1574 | 17..1471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:07 Download gff for
BS23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U3-55K-RA | 120..1574 | 17..1471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:07 Download gff for
BS23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14859256..14859392 | 1096..1232 | 100 | <- | Minus |
| 2R | 14859450..14859647 | 898..1095 | 100 | <- | Minus |
| 2R | 14858961..14859199 | 1233..1471 | 100 | <- | Minus |
| 2R | 14859709..14860535 | 71..897 | 100 | <- | Minus |
| 2R | 14860586..14860639 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:43 Download gff for
BS23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10746466..10746704 | 1233..1471 | 100 | <- | Minus |
| arm_2R | 10746761..10746897 | 1096..1232 | 100 | <- | Minus |
| arm_2R | 10746955..10747152 | 898..1095 | 100 | <- | Minus |
| arm_2R | 10747214..10748040 | 71..897 | 100 | <- | Minus |
| arm_2R | 10748091..10748144 | 17..70 | 100 | | Minus |
BS23908.pep Sequence
Translation from 16 to 1470
> BS23908.pep
MSSSFFLKPGAKGTKKRKNPAATTKGKPLKKGGKPGKSTPAAGGPVPKKQ
RRPKEEDEEIASDDEEYNSDLGGDDNTLAFSSDEGEEETPQDKRLRLAKQ
YLSEIEKQEAERAEDRELAQSVEQRLQTEYLDSVGKLRRNIAGSLKACES
SRILKHKLHHTPICALALSPDGKFLYTGAKSQFLLKWCTETGKVLEKSDV
LSHREEPETGKKRRSHVISICLSSDMKYLALAEGGPHIQIWCPQTMKHIK
TLKGHRDSVAGLVFRKGTHDLYSAAKDRSVKIWSLDEMAYVESLFGHQTA
VTSIDALSRERAITAGGSDCSLRIWKITEESQLIYNGHKDSIECVKYIND
EHFVSGGMDGAIGLWSALKKKPICTTQLAHGVGENGVANWITAIAVVVNT
DLVATGSCDGCVRLWQTNPNARKMNLIQSISIAGFINGLAFNADGSKLFV
ATGQEHRLGRWWRLKEAKNQVVVLDVKLQSAASS*
BS23908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U3-55K-PA | 484 | CG33505-PA | 1..484 | 1..484 | 2520 | 100 | Plus |
| Plap-PB | 787 | CG5105-PB | 11..262 | 150..415 | 186 | 21.4 | Plus |
| Plap-PC | 787 | CG5105-PC | 11..262 | 150..415 | 186 | 21.4 | Plus |
| Plap-PA | 787 | CG5105-PA | 11..262 | 150..415 | 186 | 21.4 | Plus |
| slmb-PC | 510 | CG3412-PC | 161..438 | 80..365 | 182 | 23.9 | Plus |
