BS23909.complete Sequence
1364 bp assembled on 2011-01-28
GenBank Submission: KX801069
> BS23909.complete
GAAGTTATCAGTCGACATGCCTAAGTCGGGTCGCGACGGAGGAGCATCCA
AGGACTCCAAATACGATCTAAGCAAAATCTCAGCTCGCGTGGATCGCGTG
AACGTCAGCGGATTGCTGCGCACCCACAACGACTATGTGATGAGGGCGGC
AGATGGCCTGTTTAAGGCCAGTAACTTCCAGGATCTAATGCTGGAGGCCA
TGTCCACCAAATCATATCTGCACGAGCTAGGCATCTTCAAGGATGTGAGC
GTGCACATCGATGTTAGCCGTGGAGCGGATGCCTCGCCACAGGGATACGA
GGTTACCTTCAAGGGCAACGAAATGTCGCGCATGATGGGTTCGGCGGGCA
CCGAGATTGGCCAGAACGAGGGCTCCCTGCGAACGGAGTTGACTATCCCC
AATATTCTGGGACGTGGCGAGAACATCTCACTGCAGGGCAGCTATAGCAG
CACCAGGGCCAATGATCTACAACTGAAGTTCTGGAAACCCTTCTTCCACA
CACGCTTCAAGGAAAATCGGCCTGAAATGTCTTTCAGCATTTTTAGGCAA
ACCGATCGGTTTGACATAAGTTCATTTCAAACCACCAACATAGGCTATTT
GGTGGACTTCTCGGCGCATACGATGGTTGGAGTGGATTTGACGCACTCGC
TGCAGTATGAGAACGCCATCAGAGACGTGGGATTGCTAAACAAATCAGTG
CCCTTCGCCATACGCGATCATTGTGGCCCCAAATTGGCCTCTTTGCTGCG
CTACTCCGTGGTCTACGACAATCGGGATGGAAACGTATTCCCCACACGCG
GTATTTACCTTAAATCAGTTAACGAATACTGCGGATTGGGCGGTAATGTC
GCCTACACCAGCAGCACTGCCCACGGAGAGTTGAATGTGCCACTGTTTGC
CGGTTTGGTGGCCCAGTTTTGCGCTCGCGTTGGCGTCGTTAAAGAGACTA
AAAATACCACCCAGCTGCCTATTAGCTCGCTATTTTACTGTGGTGGTCCA
TTGACACTGAGAGGATTTAAATTTGGAGGAGCTGGTCCAGTAGTTGAAAG
CACGCCAATTGGAGCACAGTCTTTCTGGTGCACGGGCGCTCACCTGTGGG
CACCGCTACCCTTCGCCGGAGTCTTCAAAAACCTGGCCAGCCACTTTAGA
ATGCATTTCTTCTACAACATTGGCAACAACAATAGTTTCAGCACAGAAAA
CATGCGTAGTGCATTTGGAATGGGTCTGGCGGTTAAGCTGGCCGAAAGAG
CCCGAATCGAACTCAACTATTGTGTGCCAGTGCGTCATCAGGATACAGAT
AGAATCCTGAATGGTTTCCAGTTTGGCATTGGCTATGAATTCGTTTAGAA
GCTTTCTAGACCAT
BS23909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7639-RB | 1332 | CG7639-PB | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7639-RB | 1834 | CG7639-RB | 231..1563 | 17..1349 | 6665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14988143..14988701 | 1196..638 | 2795 | 100 | Minus |
| 2R | 25286936 | 2R | 14988935..14989443 | 525..17 | 2545 | 100 | Minus |
| 2R | 25286936 | 2R | 14987931..14988086 | 1349..1194 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 14988762..14988873 | 637..526 | 560 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 24..58 | 564..598 | 112 | 80 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 4882..4916 | 564..598 | 112 | 80 | Plus |
BS23909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:29 Download gff for
BS23909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 224..1555 | 17..1348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:51 Download gff for
BS23909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 231..1562 | 17..1348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:52 Download gff for
BS23909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 231..1562 | 17..1348 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:52 Download gff for
BS23909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14987932..14988083 | 1197..1348 | 100 | <- | Minus |
| 2R | 14988143..14988701 | 638..1196 | 100 | <- | Minus |
| 2R | 14988762..14988873 | 526..637 | 100 | <- | Minus |
| 2R | 14988935..14989443 | 17..525 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:51 Download gff for
BS23909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10875437..10875588 | 1197..1348 | 100 | <- | Minus |
| arm_2R | 10875648..10876206 | 638..1196 | 100 | <- | Minus |
| arm_2R | 10876267..10876378 | 526..637 | 100 | <- | Minus |
| arm_2R | 10876440..10876948 | 17..525 | 100 | | Minus |
BS23909.pep Sequence
Translation from 16 to 1347
> BS23909.pep
MPKSGRDGGASKDSKYDLSKISARVDRVNVSGLLRTHNDYVMRAADGLFK
ASNFQDLMLEAMSTKSYLHELGIFKDVSVHIDVSRGADASPQGYEVTFKG
NEMSRMMGSAGTEIGQNEGSLRTELTIPNILGRGENISLQGSYSSTRAND
LQLKFWKPFFHTRFKENRPEMSFSIFRQTDRFDISSFQTTNIGYLVDFSA
HTMVGVDLTHSLQYENAIRDVGLLNKSVPFAIRDHCGPKLASLLRYSVVY
DNRDGNVFPTRGIYLKSVNEYCGLGGNVAYTSSTAHGELNVPLFAGLVAQ
FCARVGVVKETKNTTQLPISSLFYCGGPLTLRGFKFGGAGPVVESTPIGA
QSFWCTGAHLWAPLPFAGVFKNLASHFRMHFFYNIGNNNSFSTENMRSAF
GMGLAVKLAERARIELNYCVPVRHQDTDRILNGFQFGIGYEFV*
BS23909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7639-PB | 443 | CG7639-PB | 1..443 | 1..443 | 2323 | 100 | Plus |
