BS23914.complete Sequence
4016 bp assembled on 2011-02-18
GenBank Submission: KX802529
> BS23914.complete
GAAGTTATCAGTCGACATGTACCAGCCGCCTTTGCCACCGCCTCCAGTCC
AGCCTGCTCCTCCGCCCCCGCCACCTCCGCCAGAAGAAGATCTATCTCCA
CCGGGAGTAGGTGTTCCCTCTCACAACTATTCTTCAAATGAATCCCATTC
TCAGAGCTCGAAGTCTTTGGATTACGTCTACCCGGAGACACCGGCTCCTT
ATGCCAGCTCAGTACCTAGCTATGATCCGTACCAGCAACCACCAGCGTAC
GGCTACGAGGGATATGCTTACAACGAACAAGCACAGAAGTATGGTGGCCA
GGAGTCCCATTACCAATACCAGTACCCGGCATCCGGATCATCATTCCTCT
ATGAAAGCTATAAATACCCAGACCGCTATCCTGCTTATTCGTCCAACTAC
CGACCTCCATCCGAAAGGCAGAGGTACACTTCCAACAGCTCCAGTCAAGG
CTACCACCATTATCCCGGCTATAGCTCGGGTAGGCGGTATGAACAAAGAC
ATGATCAGGAACACCGTCAAATTCAGGACAGTCGATATGCCCACGAGCCA
CGACACGGACACTATGCCCACAGGCAGGCAAAGGGGTCGCAACACGGATA
CTATGGATCTGCAGCCAGAAACCAAGTCAGCGATGACTATTCGCCACGTG
GCCATCACGAAAGGGAGAGAAATGAGACCTTAGAGAAGACTAGGGCCAAA
CCGAAGGTGGAGACCGAAAGGGACCGTCTGTTGAGACAGTGGTGTTCTAA
CTTCTGCGAAAAACCAGAGGACTATGTGAAGAAGATGAACGCCCTCAGCG
AGGCGGATGCGCCAGTCGAATCCTGGGTGCGATCATCGCCAGCGGAGCTC
TACTACGAGCGCACCAAGAGCGAAAACGAAGTCAGAGGTCGGGCGCGTCT
GCAAAAGCTGTGCACTCTATTCGATGAGGAGCTCCTGCAGAGAGCAAAGC
GTGTACGCGAGAAGCTACCCGTTTACGTGCCGCCTCCAAGAAAGGCTCGC
CGCCGTGTTTGCAAGCATAAACACAAGTCGGAAGCCTGCTCCTCGTCCTC
CTCATCCGATGACGACTCCGACGAAGACGCTTTTAAGATCGAGCAAGACT
GCTGCATGGAGGAGCTTTCGCGCAAGGTGCAACATCCGCAGCGTGTGCAC
GCGGATCTCTGGCACAACGACGCCGGTGAGATGAACGACGGACCTCTTTG
CCGCTGCTCAGCCAAGTCCCGGCGCATTGGCATTCGACACGGCATATATC
CGGGCGAGACTGGCTATAAGTTGTGCGATCCAAACAGCAACAATGCAGGC
AAGCTGTTCCACTACAGGATCAGCATCTCACCGCCCACTAACTTCCTGAC
AAAGACACCCACCATTATCAAGCATGATGAGCACGAGTTTCTATTCGAGG
GCTTCTCACTTCTCTCGCATGTGCGTCTCTCCGATCTGCCCGTCTGCAAG
GTGATCCGCTTCAACATCGAGTACACCATTGAGTACGAAGAGGAGAAGAT
GCCAGAGAACTTCACCATCCACGAGCTAGACATTTTTTTCAAATACCTGT
TTCATGAACTGCTAGAGCTGGTAGACTTTAATCTAATGCCCAACTTACCG
TCCGGAAACGTCGAGGAATCCTGCCCAGCTTTTCACTTCTTTCCGCGTTT
CGTCCGCGACCTGCCAGATAATGGAAAGGAGGTTTTGGCCATGGTCGAGG
TACTCCGCTACTTGCTGGATAATTCTGCACAGCTTGTGGAACGGCAGCAA
CTACTGCATCTTAACCAGATTAGTCAGAGCGAGTGGCAAAACTACGTGGA
CTTCATAAAGGGAATGCTGGTCACCAAGCCGGGTTATAAGCCGTGTTCGC
TACGCGTTGACCAATTGGACAGGAATAACTCCGATTTGCCCGAGTGCGTA
GATCGCGAGACTGGAATCTCACATCCAGCAATCGTGCACTTTGGCATTTG
TCATCCTCAGCTAAGCTACGCTGGAAATCCAGAGTACCAGAAGGCGTGGC
GAGAGTACGTTAAGTACCGTCATCTGATGGCCAACATGTCGAAGCCCTCT
TTCAAGGATAAGCGCAAGCTAGAGGAGAAGGAGCAACGTCTTCAGGAGAT
GCGAACTCAGGGGCGCATGAAACGAAATATCACAGTGGCGATCAGCTCGG
AGGGCTTCTATCGCACCGGCATTATGTGCGACGTTGTGCAGCATGCCATG
TTGATTCCTGTCCTAACTGGTCACCTTCGCTTTCACAAGTCGCTGGACCT
GCTAGAGGAGAGTATCGGGTACCGCTTTAAAAATCGGTACCTTCTCCAAT
TGGCGCTGACGCATCCCTCATACAAGGAGAACTACGGTACCAATCCGGAT
CACGCCCGTAATTCGCTGACTAACTGCGGAATTCGTCAGCCGGAGTACGG
AGATCGCAAGATCCATTACATGAACACACGCAAGCGGGGTATCAACACAT
TAGTGAGCATTATGTCCAGATTTGGCAAGGAGCATGAGACTGTTTCGAAC
ATAACCCACAATGAGAGACTAGAGTTCCTCGGTGATGCTGTAGTAGAATT
CCTCAGCTCAATCCATCTGTTTTTTATGTTCCCTGAACTGGAGGAGGGTG
GTTTGGCCACTTACCGAGCGGCAATTGTCCAAAACCAGCACTTGGCTCTG
TTGGCCAAAAAGCTGCAACTGGAAGAGTTTATGCTGTACGCACACGGATC
CGATCTGTGCCACGAGTTGGAACTGCGTCACGCCATGGCCAACTGTTTTG
AAGCCCTAATGGGCGCGCTTCTATTGGATGGTGGAATCAAGGTGGCAGAT
GAGGTGTTCACGGATGCACTCTTCCGGCAGGACGAGAAACTGCTGAGTAT
ATGGAAGAATCTGCCGGAGCACCCGTTGCAGGAACAGGAGCCACTTGGGG
ATCGCAGCTGTATTGATTCCTACCGTGTGCTTAAGGAGTTAACCAAATTC
GAGGACTCTATTGGAATCAAGTTTAAGCACATTCGGCTTTTGGCTCGCGC
TTTTACCGATCGCTCCATTGGTTTCACCCACTTGACCCTTGGGTCAAATC
AGCGTTTAGAGTTCTTGGGCGACACAGTGCTGCAGCTGATTTGCTCGGAG
TACCTATATCGTCACTTCCCTGAGCACCACGAGGGCCACTTGTCCCTGCT
ACGATCCTCATTGGTCAATAATCGCACTCAAGCGGTGGTTTGCGATGATT
TGGGAATGCCGAAATATGCCGTGTATGCCAATCCCAAGGCTGATTTGAAG
ACCAAAGATCGTGCCGATCTGCTGGAGGCATTCCTCGGCGCCCTGTACGT
GGACAAGGGTCTCCTGTATTGTGAACAGTTTTGCCATGTATGTTTGTTCC
CGCGACTTCAGTTGTTTATCATGAATCAGGACTGGAACGATCCCAAGTCG
AAGCTGCAGCAGTGCTGCCTCACACTTCGCACAATGGATGGCGGCGAGCC
GGACATTCCCTACTACAAGGTGGTGGAGGCCAGTGGTCCAACTAATACGC
GGGTATACAAGGTGGCCGTTTATTTCCGCTCAAAGCGGCTGGCCACTTCA
AGTGGCTCCTCCATTCAGCAGGCGGAGATGAACGCCGCTAAGCAGGCGCT
GGAGAATTCAAGGGACCTGTTTCCCCAACTGGATCACCAAAAGCGCGTGA
TCGCCAAGAGCATAAAGAAACAAACGGGCAACGAATTGGACAACGACAGT
GATCGCCAGCATCAAGAAGAAAAAATCAAGCGGCCCAAATATGCGACACC
GCTTCAGGATGAGAGCCATCTTCCTAAGCAATATCGCATGCACGAGAACA
TTTCCAGCGATGAGTTGCCGGAAGACGAAGACTTCGAAAGCACTGCTCCC
AAGAGTCCAACAATGCCCTTAAGAAGTAACAGAAGTGGCAGTAGTAGCAG
CAGCAGCAGCAGTGATAGCGATGGCTCAACCTCTTCTCCGAAGTGCAAGC
GCCGATTAAAGAAATGTTCCTCGGTGTCTTCAAAATCTTCGCTGGGATGA
AAGCTTTCTAGACCAT
BS23914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drosha-RA | 3984 | CG8730-PA | 1..3984 | 17..4000 | 19920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drosha-RA | 4290 | CG8730-RA | 83..4072 | 12..4001 | 19935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7934096..7936420 | 1539..3863 | 11625 | 100 | Plus |
| 2R | 25286936 | 2R | 7932511..7934037 | 12..1538 | 7620 | 99.9 | Plus |
| 2R | 25286936 | 2R | 7936485..7936622 | 3864..4001 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:00:31 has no hits.
BS23914.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:27 Download gff for
BS23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drosha-RA | 91..4073 | 17..3999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:11 Download gff for
BS23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drosha-RA | 88..4070 | 17..3999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:08 Download gff for
BS23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drosha-RA | 88..4070 | 17..3999 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:08 Download gff for
BS23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7932516..7934037 | 17..1538 | 100 | -> | Plus |
| 2R | 7934096..7936420 | 1539..3863 | 100 | -> | Plus |
| 2R | 7936485..7936620 | 3864..3999 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:11 Download gff for
BS23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3820021..3821542 | 17..1538 | 100 | -> | Plus |
| arm_2R | 3821601..3823925 | 1539..3863 | 100 | -> | Plus |
| arm_2R | 3823990..3824125 | 3864..3999 | 100 | | Plus |
BS23914.pep Sequence
Translation from 16 to 3999
> BS23914.pep
MYQPPLPPPPVQPAPPPPPPPPEEDLSPPGVGVPSHNYSSNESHSQSSKS
LDYVYPETPAPYASSVPSYDPYQQPPAYGYEGYAYNEQAQKYGGQESHYQ
YQYPASGSSFLYESYKYPDRYPAYSSNYRPPSERQRYTSNSSSQGYHHYP
GYSSGRRYEQRHDQEHRQIQDSRYAHEPRHGHYAHRQAKGSQHGYYGSAA
RNQVSDDYSPRGHHERERNETLEKTRAKPKVETERDRLLRQWCSNFCEKP
EDYVKKMNALSEADAPVESWVRSSPAELYYERTKSENEVRGRARLQKLCT
LFDEELLQRAKRVREKLPVYVPPPRKARRRVCKHKHKSEACSSSSSSDDD
SDEDAFKIEQDCCMEELSRKVQHPQRVHADLWHNDAGEMNDGPLCRCSAK
SRRIGIRHGIYPGETGYKLCDPNSNNAGKLFHYRISISPPTNFLTKTPTI
IKHDEHEFLFEGFSLLSHVRLSDLPVCKVIRFNIEYTIEYEEEKMPENFT
IHELDIFFKYLFHELLELVDFNLMPNLPSGNVEESCPAFHFFPRFVRDLP
DNGKEVLAMVEVLRYLLDNSAQLVERQQLLHLNQISQSEWQNYVDFIKGM
LVTKPGYKPCSLRVDQLDRNNSDLPECVDRETGISHPAIVHFGICHPQLS
YAGNPEYQKAWREYVKYRHLMANMSKPSFKDKRKLEEKEQRLQEMRTQGR
MKRNITVAISSEGFYRTGIMCDVVQHAMLIPVLTGHLRFHKSLDLLEESI
GYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIH
YMNTRKRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVVEFLSSIH
LFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHE
LELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLP
EHPLQEQEPLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRS
IGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLV
NNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALYVDKGLL
YCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYY
KVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENSRD
LFPQLDHQKRVIAKSIKKQTGNELDNDSDRQHQEEKIKRPKYATPLQDES
HLPKQYRMHENISSDELPEDEDFESTAPKSPTMPLRSNRSGSSSSSSSSD
SDGSTSSPKCKRRLKKCSSVSSKSSLG*
BS23914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drosha-PA | 1327 | CG8730-PA | 1..1327 | 1..1327 | 7093 | 100 | Plus |
| CG5225-PA | 594 | CG5225-PA | 154..454 | 4..238 | 170 | 23.5 | Plus |
