BS23915.complete Sequence
1076 bp assembled on 2011-02-03
GenBank Submission: KX803438
> BS23915.complete
GAAGTTATCAGTCGACATGTTGGAGAACGGTTCGCACTTCTTCGAGGGCG
TTGAGAAACTCCTTGAGATTTGGTTTGAGGAGAGCTCCAACGGTGACGAT
GATCTGCGTAACATCAGCAGATCTGATTGGGAAAACGTGCTTAGCAATGT
CAACTGTCAAATAATAAGCACATCCAAAAACGACATTATTGATGCTTTTG
TGTTAAGTGAGAGCAGTATGTTTGTTTCAAAGCGACGATGGATCCTTAAA
ACTTGTGGAACGACTACTCCATTGAAATGCCTGGGTCAGTTGCTTAAGCT
GGCTGAGGCCAATGGATACAATGTGGTCGCAGACTTGTTCTACTCGCGAA
AAAATTTCACTAGACCGGAGGCGCAGATAACTCCCCATCAAGGCTTTACG
GAGGAAGTTACGTATCTGGACTCAATTTTTCCCAACGGAAGATCCTATTG
TCTGGGCTCCATGAACCTGGAGTGTTGGTACCTCTACACTTTTAGTCGTT
CTGATATCAAAATTACGCCCCAACTTATATCGGATGAGAAAAACGTTGAC
TCCGATCCAGATCAAACTATTGAAATATTAATGCAAGATCTAGATCCCGA
AACCATGTCAATCTTCTATAAAAACAAGTTTAATGATGCTAATGGCGCTA
CTGTGAAATCTGGTATCGATACCATATTGCCGACTATGCACATTGATGAC
TTTTTGTTCGATCCTTGCGGCTACTCCATGAATGGAATCAACGATAAGGG
GGAGTACATGACAATTCATATTACTCCGGAGAATCAATTTTCGTATGTGA
GCTTCGAAACAAATGTGGCTCTAAGTAACTATCGTAAACTTATCAATCAA
GTAATCAATACTTTCAAGCCGGGAAAGTTTATTGTAACCATCTTTGCCAA
TAAGTGCTCGTTGGCCTACGAAACTATGAAGGAACTGGAAGTGGAGTACT
CACAGGGATCGCACTGGAAACGAACCGACATGCAATGTTGCAACTTTCCA
TCTTACAATCTTCTGTTTGCACAATATTCCCACAGTGAGAAAACTGGTGA
TAATTTATAAAAGCTTTCTAGACCAT
BS23915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SamDC-RA | 1044 | CG5029-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SamDC-RA | 1224 | CG5029-RA | 58..1104 | 16..1062 | 5235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10340530..10340811 | 374..655 | 1410 | 100 | Plus |
| 2L | 23513712 | 2L | 10340309..10340479 | 206..376 | 855 | 100 | Plus |
| 2L | 23513712 | 2L | 10341224..10341383 | 903..1062 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 10341006..10341163 | 747..904 | 790 | 100 | Plus |
| 2L | 23513712 | 2L | 10339514..10339618 | 16..120 | 525 | 100 | Plus |
| 2L | 23513712 | 2L | 10340866..10340960 | 655..749 | 475 | 100 | Plus |
| 2L | 23513712 | 2L | 10340149..10340238 | 118..207 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord | 7404 | accord ACCORD 7404bp | 3922..3991 | 692..621 | 111 | 65.3 | Minus |
BS23915.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:34 Download gff for
BS23915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SamDC-RA | 50..1086 | 22..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:17 Download gff for
BS23915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SamDC-RA | 64..1100 | 22..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:43 Download gff for
BS23915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SamDC-RA | 64..1100 | 22..1058 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:43 Download gff for
BS23915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10341008..10341163 | 749..904 | 100 | -> | Plus |
| 2L | 10341226..10341379 | 905..1058 | 100 | | Plus |
| 2L | 10340311..10340479 | 208..376 | 100 | -> | Plus |
| 2L | 10340533..10340811 | 377..655 | 100 | -> | Plus |
| 2L | 10339520..10339618 | 22..120 | 100 | -> | Plus |
| 2L | 10340152..10340238 | 121..207 | 100 | -> | Plus |
| 2L | 10340867..10340959 | 656..748 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:17 Download gff for
BS23915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10341226..10341379 | 905..1058 | 100 | | Plus |
| arm_2L | 10340867..10340959 | 656..748 | 100 | -> | Plus |
| arm_2L | 10341008..10341163 | 749..904 | 100 | -> | Plus |
| arm_2L | 10339520..10339618 | 22..120 | 100 | -> | Plus |
| arm_2L | 10340152..10340238 | 121..207 | 100 | -> | Plus |
| arm_2L | 10340311..10340479 | 208..376 | 100 | -> | Plus |
| arm_2L | 10340533..10340811 | 377..655 | 100 | -> | Plus |
BS23915.pep Sequence
Translation from 16 to 1059
> BS23915.pep
MLENGSHFFEGVEKLLEIWFEESSNGDDDLRNISRSDWENVLSNVNCQII
STSKNDIIDAFVLSESSMFVSKRRWILKTCGTTTPLKCLGQLLKLAEANG
YNVVADLFYSRKNFTRPEAQITPHQGFTEEVTYLDSIFPNGRSYCLGSMN
LECWYLYTFSRSDIKITPQLISDEKNVDSDPDQTIEILMQDLDPETMSIF
YKNKFNDANGATVKSGIDTILPTMHIDDFLFDPCGYSMNGINDKGEYMTI
HITPENQFSYVSFETNVALSNYRKLINQVINTFKPGKFIVTIFANKCSLA
YETMKELEVEYSQGSHWKRTDMQCCNFPSYNLLFAQYSHSEKTGDNL*
BS23915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SamDC-PA | 347 | CG5029-PA | 1..347 | 1..347 | 1849 | 100 | Plus |
