BS23917.complete Sequence
1589 bp assembled on 2011-02-18
GenBank Submission: KX803919
> BS23917.complete
GAAGTTATCAGTCGACATGGCCACCAACCTGCAAAAGGCCACCCTTGAGG
AAATTCGACATGCGGCCGCGCGTATTTGCCGAGACTATCTAACTGGGCCC
TGGAAAGTGGTTACTCCGGAGAGTTTGGTAGTGAAGCGCATAAGTGGCGG
GCTGTCAAATTTCTTGTATTACGTAAGCCTTCCCGATTTAAATGACTACG
ATGAGCTGGACGAACAGAAACAGCAGCAGGAAGACATCATAGGGGCCACC
GCAACTGTGACCAATAGAAGCGGAGTTTTCATACACGACGATGAGTCGGC
TGCCAAGGCGGTGGGCGTAACATTGATGGCGAGGGAATTAATAAATAACG
ATGACGTCGCCGACGCAGCTCCTGGCGCCACACAAGCACACAAACGTCAG
CGATGCGATAGTAATAGTCGCGAATGCAGTTCTTCGAAACGATTGCACGC
CCCCAAGCAGCAACCCCGTGAGGTCCTTCTGCGAATATATGGTCAGACCC
ATGGTGATCACGCCCTGGAGAGCATGATTACCGAGTCCGTGGTTTTCGCC
CTTCTCAGTGAACGGAACTATGGGCCCAAACTGCACGGAATCTTTCCGGG
CGGACGTATTGAACAATATATTCCGGCACGCGCTTTGACCACAGCAGAAT
TGGGAGAGCAACGAATATTAAAGAGAGTGGCTGAGAAAATGGGTGAGATC
CACAGTCTTAATATACCCATGTCTAAGGAGCCCGATTGGATTTGGAATTG
TATGCAGCGTTGGGTTTCCGGTTTAGAGAGCATTGTTAACGGCAGTGTCC
AAACGAATCAAAAATCTTCGGTACTGAAGAAGCAAATGGAATTGATGCGG
ACCTTTGACTACGTTCAAGAGATGGCCTGGATTAGGTCGATTATCGATGA
AGGAGATTATCCAGTTGTGTTCTGTCATAATGATCTGCAAGAAGGTAATA
TTCTGATGCGACAACCGTCAGCTGGTCAAAACGAACGGACCCCCCGGGAG
TCAATCAGTAGCCTGAGATCCAACTTCGACGAAACTTTGGGTGATAGCCT
TGATGGAAATAGCAATATATCGGATACGGAGACACACAAATCACGTAGCG
TGTCGCCTTCACCATGCCCGGAGTTGGACACTACGAATGACTCAGCCCTG
GATTCCAGCTTCATGGCCGATAATGAGCCGGATCTTATTATCATCGACTT
TGAGTATTGTGCCTACAACTACCGTGGCTATGATCTTGCCAATCATTTTA
TTGAGTGGACTTTCGACTACACTAACCCACAGTTCCCTTACTTCTACCAC
AACTCCAGCAACTGCGCAACTGTTCAGCAACGGCGCGACTTCATTGTAAA
CTATTTAAAGAAATTTCACGATGACGAGAACTATAATATCACTGGCCAGG
AGTTGATGAAGGTAGACGCTGAGATTCAGTTCTTTACAATGCTGTCTCAT
CTGTTCTGGAGCCTTTGGTCCGTAATTAATGTCACATCGGCGATTGAGTT
TGGTTATTGGGAATATGGTATTGCTCGAATTTTGGAATATCAAAAGCTAA
AGGCAGCTTATCAAGCTAATTAAAAGCTTTCTAGACCAT
BS23917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-RG | 1557 | CG2201-PG | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG2201-RA | 1557 | CG2201-PA | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG2201-RF | 1665 | CG2201-PF | 130..1665 | 38..1573 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-RG | 2463 | CG2201-RG | 695..2251 | 17..1573 | 7785 | 100 | Plus |
| CG2201-RA | 2010 | CG2201-RA | 242..1798 | 17..1573 | 7785 | 100 | Plus |
| CG2201-RF | 2561 | CG2201-RF | 280..1815 | 38..1573 | 7680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21615102..21615526 | 1511..1087 | 2125 | 100 | Minus |
| 2L | 23513712 | 2L | 21616182..21616574 | 1017..625 | 1965 | 100 | Minus |
| 2L | 23513712 | 2L | 21617492..21617823 | 474..143 | 1660 | 100 | Minus |
| 2L | 23513712 | 2L | 21617279..21617434 | 626..471 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 21618004..21618112 | 144..36 | 545 | 100 | Minus |
| 2L | 23513712 | 2L | 21615608..21615678 | 1086..1016 | 355 | 100 | Minus |
| 2L | 23513712 | 2L | 21614978..21615041 | 1573..1510 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:04:37 has no hits.
BS23917.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:27 Download gff for
BS23917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 214..1768 | 17..1571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:35 Download gff for
BS23917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 242..1796 | 17..1571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:29 Download gff for
BS23917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 242..1796 | 17..1571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:29 Download gff for
BS23917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21617280..21617432 | 473..625 | 100 | <- | Minus |
| 2L | 21617494..21617821 | 145..472 | 100 | <- | Minus |
| 2L | 21618004..21618110 | 38..144 | 100 | <- | Minus |
| 2L | 21623366..21623386 | 17..37 | 100 | | Minus |
| 2L | 21616182..21616573 | 626..1017 | 100 | <- | Minus |
| 2L | 21614980..21615040 | 1511..1571 | 100 | <- | Minus |
| 2L | 21615103..21615526 | 1087..1510 | 100 | <- | Minus |
| 2L | 21615608..21615676 | 1018..1086 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:35 Download gff for
BS23917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21614980..21615040 | 1511..1571 | 100 | <- | Minus |
| arm_2L | 21615103..21615526 | 1087..1510 | 100 | <- | Minus |
| arm_2L | 21615608..21615676 | 1018..1086 | 100 | <- | Minus |
| arm_2L | 21616182..21616573 | 626..1017 | 100 | <- | Minus |
| arm_2L | 21617280..21617432 | 473..625 | 100 | <- | Minus |
| arm_2L | 21617494..21617821 | 145..472 | 100 | <- | Minus |
| arm_2L | 21618004..21618110 | 38..144 | 100 | <- | Minus |
| arm_2L | 21623366..21623386 | 17..37 | 100 | | Minus |
BS23917.pep Sequence
Translation from 16 to 1572
> BS23917.pep
MATNLQKATLEEIRHAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFL
YYVSLPDLNDYDELDEQKQQQEDIIGATATVTNRSGVFIHDDESAAKAVG
VTLMARELINNDDVADAAPGATQAHKRQRCDSNSRECSSSKRLHAPKQQP
REVLLRIYGQTHGDHALESMITESVVFALLSERNYGPKLHGIFPGGRIEQ
YIPARALTTAELGEQRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWV
SGLESIVNGSVQTNQKSSVLKKQMELMRTFDYVQEMAWIRSIIDEGDYPV
VFCHNDLQEGNILMRQPSAGQNERTPRESISSLRSNFDETLGDSLDGNSN
ISDTETHKSRSVSPSPCPELDTTNDSALDSSFMADNEPDLIIIDFEYCAY
NYRGYDLANHFIEWTFDYTNPQFPYFYHNSSNCATVQQRRDFIVNYLKKF
HDDENYNITGQELMKVDAEIQFFTMLSHLFWSLWSVINVTSAIEFGYWEY
GIARILEYQKLKAAYQAN*
BS23917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-PG | 518 | CG2201-PG | 1..518 | 1..518 | 2730 | 100 | Plus |
| CG2201-PA | 518 | CG2201-PA | 1..518 | 1..518 | 2730 | 100 | Plus |
| CG2201-PF | 554 | CG2201-PF | 44..554 | 8..518 | 2696 | 100 | Plus |
| CG2201-PB | 554 | CG2201-PB | 44..554 | 8..518 | 2696 | 100 | Plus |
| CG2201-PC | 415 | CG2201-PC | 1..415 | 104..518 | 2206 | 100 | Plus |
