BS23918.complete Sequence
2276 bp assembled on 2011-07-18
GenBank Submission: KX805602
> BS23918.complete
GAAGTTATCAGTCGACATGCAAAAGTCTATAACCTCCTTCTTCAAGAAGA
AATCCGATGCCACCGACAGCCCCTCGCCGCCCAAGAAAGTTCCTAAGATT
GATGCGAAGACCGAACTCCCAGATGAACCCCACATCAAGAGCGAAAGTGC
CTCCCCGGAAACTAAGCCCAAGGTAGAACCTATGTCTGTGGATTCCGAGG
AGAAGACAAGTCCGGTGAAAAATGTTAAGAAGGAACCAAAGGAAGTCGAT
GACAAGACCACTGACAAGAAGGTCACAACCATAGGTCTCAACTCCACTGC
CGCTACTAAGGAGGATGTGGAAAACTACGATCCATCCGCCGACTCCTATC
ATCCGCTCAAGAATGCCTACTGGAAGGACAAAAAGGTCACTCCCTACTTG
GCACTGGCCCGCACATTTCAAGTAATCGAGGAGACCAAAGGCCGGCTCAA
GATGATCGACACGCTGAGCAACTTCTTCTGCTCTGTGATGCTGGTCAGTC
CGGAGGATCTTGTGCCCAGCGTCTACCTCAGCATCAACCAACTGGCGCCC
GCCTACGAGGGACTGGAGCTGGGCGTTGCCGAGACCACCTTGATGAAGGC
CATTTGCAAGGCAACGGGGCGTAATTTGGCTCACATTAAATCGCAGACGC
AGCTAACCGGGGATCTGGGCATCGTGGCCGAGCAGTCGCGCGTTTCACAG
CGCATGATGTTCCAGCCAGCGCCTCTGAATGTGAGGGATGTGTTCCGGAA
GCTACGCGAAATAGCCAAGCTATCCGGTCAGTCGAAAATGGACCTGGTGT
ACAATATGTTTGTGGCCTGTCGATCGTCGGAGGCTCGCTTCTTTATCCGT
TCATTGATTGGCAAGCTAAGAATTGGCATTGCAGAGCAGAGTTTGCTCAC
AGCGCTGGCCATTGGTTTGGTGAAAAAGAACCACATCGATGATTGCAAGG
CTAGCAAGGTGCCGGATGTGTATAAGGATGAAATAGTCGACACCACTTTG
CTGTTGAAAACTGCATACTGTCAGTGTCCCAATTATGATATCATTATACC
GGCCATTCTAAAGTACGATATTAAGGAGCTGCAGGAACGCTGCCCCATGC
ATCCCGGCATGCCGCTGAGGCCCATGCTCGCCCAGCCCACCAAGGGGGTC
CATGAGGTATTTGAGAGATTCGGCGGCATGCAAATCACCTGCGAGTGGAA
ATACGATGGAGAGCGGGCCCAAATCCACCGCAACGAGAAGGGGGAGATCA
GCATATTCTCGCGCAACTCCGAGAACAACACGGCAAAATATCCGGATTTG
ATTGCCAGGAGCACTGCCTTGCTCAAGGGCGACGTAAAGTCCTACATCAT
AGACAGCGAAATTGTGGCCTGGGATGTGGAGCGCAAGCAGATTCTGCCGT
TTCAGGTGCTCAGCACGCGCAAACGGAAGAACGTTGATATCGAGGAAATC
AAGGTCCAAGTCTGTGTCTACATCTTCGATCTGCTGTACATCAATGGCAC
TGCTCTGGTGACCAAAAACCTGTCGGAGCGTCGCAAGCTCCTGTTGGAGC
ACTTTCAAGAGGTCGAGGGCGAGTGGAAGTTCGCCACTGCTCTGGACACC
AATGACATAGACGAAGTGCAGCAGTTCCTGGAGGAGTCTATCAAAGGAAA
TTGCGAGGGCCTCATGGTCAAAACATTGGATGAGGAGGCCACCTATGAGA
TTGCCAAGAGATCCCGCAACTGGCTGAAATTGAAGAAGGACTACCTATCC
AATGTGGGCGACTCACTCGATTTGGTGGTCATTGGTGGCTACAAAGGCAA
GGGCCGGCGAACTGGAACCTACGGAGGATTTTTGCTTGCCTGCTATGACA
CCGAAAACGAGGAGTATCAGAGCATATGCAAGATTGGAACTGGCTTCACT
GATGAGGACCTGCAAACGCATTCCGAGTTTTTGGGCAAACATGTGACCAG
CGCCGCCAAATCCTACTACAGATACGACCCCAGCCTGGAGCCCGATCACT
GGTTTGAACCGGTCCAGGTGTGGGAAGTCAAATGCGCGGATCTGTCGCTC
AGTCCGATCCACCGAGCAGCCATTGGCATTGTGGACGGAGAGCGGGGCAT
TTCCTTGAGATTCCCTCGGTTCATTCGGATACGCGACGACAAGAATAGCG
AAAACGCAACGGACGCCAATCAGGTGGCCCACATGTACCAGTCGCAGGAT
CAGGTTAAAAATAATCAAAAGTCGAGCACACAAATGGAGATGGAGGACGA
GTTCTACTGAAAGCTTTCTAGACCAT
BS23918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNA-ligI-RA | 2244 | CG5602-PA | 1..2244 | 17..2260 | 11190 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNA-ligI-RA | 2386 | CG5602-RA | 85..2328 | 17..2260 | 11190 | 99.9 | Plus |
| Upf3-RD | 1671 | CG11184-RD | 1618..1671 | 2260..2207 | 270 | 100 | Minus |
| Upf3-RB | 1809 | CG11184-RB | 1756..1809 | 2260..2207 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23891139..23891771 | 388..1020 | 3165 | 100 | Plus |
| 2R | 25286936 | 2R | 23891826..23892453 | 1020..1647 | 3110 | 99.7 | Plus |
| 2R | 25286936 | 2R | 23892504..23893119 | 1645..2260 | 3080 | 100 | Plus |
| 2R | 25286936 | 2R | 23890788..23891078 | 97..387 | 1455 | 100 | Plus |
| 2R | 25286936 | 2R | 23890670..23890733 | 34..97 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:44:36 has no hits.
BS23918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 16:37:06 Download gff for
BS23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5602-RA | 59..2301 | 17..2259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:18 Download gff for
BS23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNA-ligI-RA | 85..2327 | 17..2259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:09 Download gff for
BS23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNA-ligI-RA | 85..2327 | 17..2259 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:09 Download gff for
BS23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23890596..23890612 | 17..33 | 100 | -> | Plus |
| 2R | 23890670..23890732 | 34..96 | 100 | -> | Plus |
| 2R | 23890788..23891078 | 97..387 | 100 | -> | Plus |
| 2R | 23891139..23891771 | 388..1020 | 100 | -> | Plus |
| 2R | 23891827..23892452 | 1021..1646 | 99 | -> | Plus |
| 2R | 23892506..23893118 | 1647..2259 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:18 Download gff for
BS23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19778119..19778135 | 17..33 | 100 | -> | Plus |
| arm_2R | 19778193..19778255 | 34..96 | 100 | -> | Plus |
| arm_2R | 19778311..19778601 | 97..387 | 100 | -> | Plus |
| arm_2R | 19778662..19779294 | 388..1020 | 100 | -> | Plus |
| arm_2R | 19779350..19779975 | 1021..1646 | 99 | -> | Plus |
| arm_2R | 19780029..19780641 | 1647..2259 | 100 | | Plus |
BS23918.pep Sequence
Translation from 16 to 2259
> BS23918.pep
MQKSITSFFKKKSDATDSPSPPKKVPKIDAKTELPDEPHIKSESASPETK
PKVEPMSVDSEEKTSPVKNVKKEPKEVDDKTTDKKVTTIGLNSTAATKED
VENYDPSADSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTL
SNFFCSVMLVSPEDLVPSVYLSINQLAPAYEGLELGVAETTLMKAICKAT
GRNLAHIKSQTQLTGDLGIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIA
KLSGQSKMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIG
LVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKY
DIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGER
AQIHRNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIV
AWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTK
NLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLM
VKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTG
TYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSY
YRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFP
RFIRIRDDKNSENATDANQVAHMYQSQDQVKNNQKSSTQMEMEDEFY*
BS23918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNA-ligI-PA | 747 | CG5602-PA | 1..747 | 1..747 | 3870 | 100 | Plus |
| lig3-PA | 806 | CG17227-PA | 254..609 | 366..733 | 400 | 30.3 | Plus |
| Lig4-PA | 918 | CG12176-PA | 128..599 | 224..709 | 256 | 23.4 | Plus |
