BS23922.complete Sequence
1628 bp assembled on 2011-02-18
GenBank Submission: KX800625
> BS23922.complete
GAAGTTATCAGTCGACATGGCCGTCAGCTTCGAGAAGAATCGGGCGCAAA
TAGTGGCCGCCTGGAAGGATGTGCTGGACGATAAGAGCGACACGAACTGG
TCCCTCTTTGGCTACGAGGGTCAGACCAACGAGCTGAAGGTGGTGGCCAC
CGGCGATGGCGGCGTGGATGAGCTAAACGAAGACCTAAATAGCGGCAAGA
TTATGTACGCCTTCGTCCGAATCGAAGACCCCAAAACGGGCCTCAACAAG
TACTTGCTCATCAACTGGCAGGGCGAGGGCGCACCTGTTCTACGCAAGGG
TACCTGCGCCAACCACATACGTGATGTGAGTAATTTGCTGTCCGGCGCTC
ACCTTACCATCAATGCCCGGAACGAGGACGATATTGACTTGGATCGGCTT
CTCAAGAAGCTGAGCACCGTGAGCTCAGCCTACAGCTTTAAGGAACCTCG
AGGCGCCATGGAGGAGCAGAAGGCGCCGGTGGGAACCAACTATACTCGGG
TCATTCCCACCAAGGAGTTAAACGCCAGCGTTATGCAGGACTTCTGGAAA
AAGGAGGAGGCCGAGGAGAAATTGCGACAGGAGGCAGAGAAGGAATCCAA
GCGGCTTGAGCTTCAAAAGTTGGAGCAGGAGCAACGTAGTCGCGAGGAGA
AGGAGCACAAGGAGCGGGAGAAGTTGGTCATAAGCACCACCAAGCTCCAG
CCGGCCCACGTACCCATCAAAACGTCACCGCAACCTTTGAGCCCTGAGAA
AACTGCACCAGGATTTGCCAACAATCTGACCGATGCGGAGCGCATGCGTC
AGGCGAGGAACCAGGAGGCCCGCGAATTGATTGGCTCTCGTGTGGGTGCT
GCCAAGGCCATGTTTACAAAGCACACGAGCGAGGGACAACTTCAGTCTAA
ACTAAATACGCAACCGCCGGCCAAACCAGCTCGCAACTCGATTGCCCAGC
GCATCAACGTTTTCAACCAAAACCAGCCTCAAGATGCACCTGTGCCTTCA
CCACCACGCGCTGCGTCCCCTGCCAAACCGTTGCCTGTAGAGGCTCCCGA
ACCAGTAGTCCCCGCTCCAGCTATAGCTCCTGCTGCTCCCGTGGCTGCCG
AGGTTGTTTCCACAATAGCGGAGGTGGAGGAGTCGCAACCGGTAGACGAT
TTGCCACTGGCCCATGAGAGCGAACAGTTCTCGACTATCAAGCGATCACC
CCATAGTAAATCGAACTCGCTGCAGTCTCAGTCGCCCGACGAGACCACCT
CTTCCAATGAAACAGACACCGCTGTTTCCCAGGAACAGGAAGAGGAGGTC
CGCACCAAGGTGTCAGTCACCGTGCAGCAGTCGCAATCGGTCAAGTCGAG
CGGCATGAGCACACTCGAAAGGAATGCATTAACGGATTTGGTAAACGAGG
ACGATTTTATCTGCCAGGAGACCTTAGGCGATCTGGGACAACGGGCACGA
GCTCTATACGATTACCAGGCAGCCGACGAGACAGAGATCACTTTCGATCC
AGGCGATGTCATTACGCATATCGATCAAATCGACGAGGGATGGTGGCAGG
GACTGGGCCCTGATGGAACCTATGGACTGTTTCCGGCAAACTATGTCGAG
ATCATCAACTAGAAGCTTTCTAGACCAT
BS23922.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abp1-RA | 1596 | CG10083-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abp1-RA | 2500 | CG10083-RA | 424..2019 | 17..1612 | 7980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13484310..13484788 | 1379..901 | 2395 | 100 | Minus |
| 3L | 28110227 | 3L | 13485087..13485543 | 725..269 | 2285 | 100 | Minus |
| 3L | 28110227 | 3L | 13485602..13485857 | 272..17 | 1280 | 100 | Minus |
| 3L | 28110227 | 3L | 13484014..13484246 | 1612..1380 | 1165 | 100 | Minus |
| 3L | 28110227 | 3L | 13484851..13485027 | 900..724 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:59:33 has no hits.
BS23922.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:26 Download gff for
BS23922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10083-RA | 442..2037 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:05 Download gff for
BS23922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abp1-RA | 424..2019 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:47 Download gff for
BS23922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abp1-RA | 424..2019 | 17..1612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:47 Download gff for
BS23922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13484851..13485027 | 724..900 | 100 | <- | Minus |
| 3L | 13484014..13484246 | 1380..1612 | 100 | <- | Minus |
| 3L | 13484310..13484788 | 901..1379 | 100 | <- | Minus |
| 3L | 13485089..13485540 | 272..723 | 100 | <- | Minus |
| 3L | 13485603..13485857 | 17..271 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:05 Download gff for
BS23922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13478703..13478957 | 17..271 | 100 | | Minus |
| arm_3L | 13477114..13477346 | 1380..1612 | 100 | <- | Minus |
| arm_3L | 13477410..13477888 | 901..1379 | 100 | <- | Minus |
| arm_3L | 13477951..13478127 | 724..900 | 100 | <- | Minus |
| arm_3L | 13478189..13478640 | 272..723 | 100 | <- | Minus |
BS23922.pep Sequence
Translation from 16 to 1611
> BS23922.pep
MAVSFEKNRAQIVAAWKDVLDDKSDTNWSLFGYEGQTNELKVVATGDGGV
DELNEDLNSGKIMYAFVRIEDPKTGLNKYLLINWQGEGAPVLRKGTCANH
IRDVSNLLSGAHLTINARNEDDIDLDRLLKKLSTVSSAYSFKEPRGAMEE
QKAPVGTNYTRVIPTKELNASVMQDFWKKEEAEEKLRQEAEKESKRLELQ
KLEQEQRSREEKEHKEREKLVISTTKLQPAHVPIKTSPQPLSPEKTAPGF
ANNLTDAERMRQARNQEARELIGSRVGAAKAMFTKHTSEGQLQSKLNTQP
PAKPARNSIAQRINVFNQNQPQDAPVPSPPRAASPAKPLPVEAPEPVVPA
PAIAPAAPVAAEVVSTIAEVEESQPVDDLPLAHESEQFSTIKRSPHSKSN
SLQSQSPDETTSSNETDTAVSQEQEEEVRTKVSVTVQQSQSVKSSGMSTL
ERNALTDLVNEDDFICQETLGDLGQRARALYDYQAADETEITFDPGDVIT
HIDQIDEGWWQGLGPDGTYGLFPANYVEIIN*
BS23922.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abp1-PA | 531 | CG10083-PA | 1..531 | 1..531 | 2719 | 100 | Plus |
| Cortactin-PD | 559 | CG3637-PD | 248..555 | 184..530 | 293 | 29.1 | Plus |
| Cortactin-PC | 559 | CG3637-PC | 248..555 | 184..530 | 293 | 29.1 | Plus |
| Cortactin-PB | 559 | CG3637-PB | 248..555 | 184..530 | 293 | 29.1 | Plus |
| Cortactin-PA | 559 | CG3637-PA | 248..555 | 184..530 | 293 | 29.1 | Plus |
