BS23929.complete Sequence
587 bp assembled on 2011-01-28
GenBank Submission: KX805232
> BS23929.complete
GAAGTTATCAGTCGACATGGGCTTCCTCACAGTATTAAAAAAGATGCGAC
AGAAGGAAAGGGAAATGCGCATATTACTGCTAGGTCTGGATAATGCCGGC
AAGACGACAATCCTGAAGCGCTTTAATGGCGAACCCATAGACACCATCTC
ACCCACACTGGGATTCAATATTAAAACCTTGGAGCACAACGGCTACACCC
TGAATATGTGGGATGTCGGTGGCCAGAAGTCTCTGCGATCCTACTGGAGA
AACTACTTCGAGTCCACTGATGGTCTGGTCTGGGTGGTGGATAGCGCTGA
CAGGATGCGCCTAGAGTCCTGCGGCCAGGAGCTGCAAGTTCTGCTCCAGG
AAGAGCGATTAGCTGGAGCCACACTCCTAGTTCTCTGCAACAAACAGGAT
CTACCGGGAGCCCTCTCATCCAACGAAATTAAAGAGATACTACACCTAGA
GGATATCACCACACATCATTGGCTGGTGGCCGGAGTTAGTGCAGTGACTG
GCGAGAAACTGCTTAGCTCCATGGACTGGTTGATCGCCGATATAGCTAAG
CGTATATTCACTTTGGATTAAAAGCTTTCTAGACCAT
BS23929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arl2-RA | 555 | CG7435-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arl2-RA | 656 | CG7435-RA | 79..635 | 16..572 | 2785 | 100 | Plus |
| CG9601-RA | 1856 | CG9601-RA | 1666..1803 | 572..435 | 690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8341303..8341657 | 82..436 | 1775 | 100 | Plus |
| 3R | 32079331 | 3R | 8341714..8341851 | 435..572 | 690 | 100 | Plus |
| 3R | 32079331 | 3R | 8341178..8341243 | 16..81 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:03:30 has no hits.
BS23929.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:31 Download gff for
BS23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf84F-RA | 80..632 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:19 Download gff for
BS23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arl2-RA | 80..632 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:16 Download gff for
BS23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arl2-RA | 80..632 | 17..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:16 Download gff for
BS23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8341303..8341657 | 82..436 | 100 | -> | Plus |
| 3R | 8341179..8341243 | 17..81 | 100 | -> | Plus |
| 3R | 8341716..8341848 | 437..569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:19 Download gff for
BS23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4166901..4166965 | 17..81 | 100 | -> | Plus |
| arm_3R | 4167025..4167379 | 82..436 | 100 | -> | Plus |
| arm_3R | 4167438..4167570 | 437..569 | 100 | | Plus |
BS23929.pep Sequence
Translation from 16 to 570
> BS23929.pep
MGFLTVLKKMRQKEREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGF
NIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLE
SCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTH
HWLVAGVSAVTGEKLLSSMDWLIADIAKRIFTLD*
BS23929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arl2-PA | 184 | CG7435-PA | 1..184 | 1..184 | 950 | 100 | Plus |
| dnd-PA | 179 | CG6560-PA | 1..179 | 1..178 | 440 | 46.9 | Plus |
| Arf102F-PB | 180 | CG11027-PB | 15..180 | 14..179 | 410 | 45.8 | Plus |
| Arf102F-PA | 180 | CG11027-PA | 15..180 | 14..179 | 410 | 45.8 | Plus |
| Arf79F-PJ | 182 | CG8385-PJ | 15..173 | 14..172 | 383 | 44.7 | Plus |
