BS23931.complete Sequence
1844 bp assembled on 2011-02-18
GenBank Submission: KX804918
> BS23931.complete
GAAGTTATCAGTCGACATGGGGTTTTTTTTGTTTAAAAACATAGTTCGCA
ATTCTGATAAATTATTCGGAAATAAAACTCCAACTAGAGTTTCGCTATTG
TCCAGATTTTGTGGCACTTCCTTGGCTGGTAAAATGGAGAAGGTTTATTT
GAGAAATGCAAGTGATACCAAAGAATTGGACATTGTGTTTCGCTTTGTGA
ATGAGAATTTGAAAATAAACCGGGAATTCAATTTCCGTCGCCAGATGAAT
GAGCCCATTGATGCGATATTGGCCAGGATTCAGAGTAATATTATTGGCAG
GCTTGCAAAGTCCTGCAAAAAATCAAAAATCAAACCGCCGGCAGAAATCA
ATGTTAAACTTCTGAGTGACAAATATGGTGAAAAATTCAATGAATTAACA
TTTGAGGATCTAGTCGTCACCCAAGATATCAGCAATGTAAAACTGCAGGT
ATTAGATACGGTCTACGATTTGGTGTTCAATCCACCGTGGATTTCATCCC
TAAAATTTTTGCCCTCATGCATATTGGCAGGATTTGTAATATACCCCACC
AATGTTCAGATACAATTCGGAGAACGTCAGTTCAGCAAAGCAGTTTGGTT
CAAGGCCAAAAAGCCCACAGACACCGATTGGGAGGTGTGCGGAGAAGGAT
TTCAATATCTAGTGACTCCTGAGGATATTGGTTACCATTTGAAGTTCGTG
GTGACGCCGGGTAATGCACTGGGAATGACGGGTCCTGTGGTGGAGAAGAT
AACCAACTCTGCAGTGCAGGAATCTCCCGGGCGTTGTCCATTCCAAGATC
GCCAAAGGCACACCACGAATTCTTTGAGCGAATCGAATGAAATTCGTGTG
GTGTCTTACAATTTGTTGGCCGATTTATATGCCAGTAGTGACTATGCCGG
TAGCACTCTGTTCTCCTATTGCCCGGCAAAGTATCTGCAAATAGACTATA
GGAAGCCACTGTTCATCAACGAGATCATCGGTTATAACTCCGATATTCTC
TGTCTACAAGAAGTCGATCAGCGAATATTTGATTTTGATTTAAAGGAAAT
TCTAGAACAACCGCCGTATAACTATCACGGCATAATGGCCCCGAAAGGCA
AATGCGCTGAGGGAGTGGCAATTTTCTTTCGGAACTCGCGCTTCGATCTC
TTGGATTCTCAAATCCTGCATTTGGGGTCCAATATTCCCGCACTGCCCGT
ATTTGAAAGCCTTTGGAATAAGATCAAAGTTAACGCACAATTAGCAGAAC
GAATCTGTGAACGGTCCACCACTCTGCAAACTTGTTTGCTTAGAATAAAG
GGTACCGATAACTACGTTCTGGTGGCCAACACGCATTTATATTTCCATCC
GGATGCAGATCACATTCGCCTGCTGCAAATGGGATTTTCCATGCTATTCG
TAGAGCAATCTATTAGCAAAGCTATAAAGGACTTTAACATAAGTAGCCAC
AAAAACATTGGACTAATATTTTGTGGCGATTTCAATAGCGTTCCCGAGTG
TGGAATCTACAAGCTGATGACGGAGCAGCTCGCCGAAAAAACACTGGAGG
ACTGGCAAAGTAATGCCGAGCAGGCGGTTTCGAATGTGGAACTCGCGCAG
CCTTTCAAAATGGCATCAGCCTATGGGGCACCGGAATATACCCACTACAC
CACCCTCTTTGCGGGTTGCTTGGACTATGTGTTCTACCAAAACGATCGCT
TCGAAGTTCTAAAGGTGGTGCCACTGCCAACGGAGGAGGAGTTGAAAGCC
AATACTGCGATACCATCGGCTGTTTTTCCATCCGATCATGTTGCTCTTGT
AGCAGATCTCAAATTTAAGTCAGATTGAAAGCTTTCTAGACCAT
BS23931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31759-RD | 1695 | CG31759-PD | 1..1695 | 134..1828 | 8475 | 100 | Plus |
| CG31759-RC | 1695 | CG31759-PC | 1..1695 | 134..1828 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31759-RD | 2242 | CG31759-RD | 333..2144 | 17..1828 | 9060 | 100 | Plus |
| CG31759-RC | 2192 | CG31759-RC | 181..1992 | 17..1828 | 9060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12208099..12209910 | 17..1828 | 9060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:08:24 has no hits.
BS23931.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:28 Download gff for
BS23931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31759-RD | 429..2225 | 31..1827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:07 Download gff for
BS23931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31759-RC | 195..1991 | 31..1827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:46 Download gff for
BS23931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31759-RC | 195..1991 | 31..1827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:46 Download gff for
BS23931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12208113..12209909 | 31..1827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:07 Download gff for
BS23931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12208113..12209909 | 31..1827 | 100 | | Plus |
BS23931.pep Sequence
Translation from 16 to 1827
> BS23931.pep
MGFFLFKNIVRNSDKLFGNKTPTRVSLLSRFCGTSLAGKMEKVYLRNASD
TKELDIVFRFVNENLKINREFNFRRQMNEPIDAILARIQSNIIGRLAKSC
KKSKIKPPAEINVKLLSDKYGEKFNELTFEDLVVTQDISNVKLQVLDTVY
DLVFNPPWISSLKFLPSCILAGFVIYPTNVQIQFGERQFSKAVWFKAKKP
TDTDWEVCGEGFQYLVTPEDIGYHLKFVVTPGNALGMTGPVVEKITNSAV
QESPGRCPFQDRQRHTTNSLSESNEIRVVSYNLLADLYASSDYAGSTLFS
YCPAKYLQIDYRKPLFINEIIGYNSDILCLQEVDQRIFDFDLKEILEQPP
YNYHGIMAPKGKCAEGVAIFFRNSRFDLLDSQILHLGSNIPALPVFESLW
NKIKVNAQLAERICERSTTLQTCLLRIKGTDNYVLVANTHLYFHPDADHI
RLLQMGFSMLFVEQSISKAIKDFNISSHKNIGLIFCGDFNSVPECGIYKL
MTEQLAEKTLEDWQSNAEQAVSNVELAQPFKMASAYGAPEYTHYTTLFAG
CLDYVFYQNDRFEVLKVVPLPTEEELKANTAIPSAVFPSDHVALVADLKF
KSD*
BS23931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31759-PD | 564 | CG31759-PD | 1..564 | 40..603 | 2946 | 100 | Plus |
| CG31759-PC | 564 | CG31759-PC | 1..564 | 40..603 | 2946 | 100 | Plus |
| twin-PB | 545 | CG31137-PB | 187..527 | 278..599 | 299 | 27.9 | Plus |
| twin-PF | 552 | CG31137-PF | 194..534 | 278..599 | 299 | 27.9 | Plus |
| twin-PD | 358 | CG31137-PD | 3..340 | 281..599 | 295 | 27.9 | Plus |
