BS23933.complete Sequence
1046 bp assembled on 2011-01-28
GenBank Submission: KX801819
> BS23933.complete
GAAGTTATCAGTCGACATGTCGGTTAATACGGCTCACGCCAACAATGGCG
TGCTCATCCATGCTGGAGAGTACATACTGCTCCACAGCGACAGTGTCTCC
ATGGAGTTCTCCGGTCAGGACAATCCCATCTTCAAGGGCTCCAAAGGTGG
CAGGATTTATCTCACCTCCCACCGAATGATCTTCAATAGCAAGAAGTCCT
CGGATTCGATGCAGTCGTTCAGTGCCCCGTTTGTTGCTCTTTCGGATGTG
GAAATCGAACAGCCCGTTTTCGGGGCCAACTACATCAAGGGAAAGGTTCG
CGCTCAGCCAAATGGAAACTACGTGGGCGAGGTCAAGTTCAAGCTCCATT
TCAAGGCAGGCGGCGCAATTGAATACGGTCAAGCTCTACTGCGCTCCGCC
AAGACGGCGATGAACAACTACCACCGCGGTGGTCTGGCTGGTGATGATCC
GCCACCATATCAGCCGGCTGGATCCTGGAATGAGGCACCACCACCGGCAT
ATCAGCCACCACCTGGCTACTATGGCTGGCTGCCGCAACATGACGCCTTC
AGCGGCCCTGCGCCGAATACGGTCTATATGAGCGACAATCCGCCGCCGTA
TCCGGGTATCGCACCACCTGCTCACCAACCAGCACCGCAACAGCCGCAGG
CACCGTCGTCGAATGAACCCAATTGGTATGGTTTTTCAGCGCCGCCGCCG
CAGCAGCAACAACAGCAGCCGGGCTATGGGCCACAAGGATGGGCCGGTGG
CTATGTCCAACCTCCGCCGTACGCTTCATGTGCGCCAAATTGTCCACCAC
AGCCGCCGTACGCCGCTCCGGCTCAGACGTACAATGGCCCACAGCCATAT
GGTGGATACGGCAATGTTCCTGGCGGATTTAATACCCCCGGATTTCAGCA
ACCGAATGGAAATCCAAATGGCTATCCAGGTGGACCACCACCACCCGGAC
AACAAGCAGCAGGAGCAGCTGGAGGAGCCGCCGCATCTGGAGCCAGCTTT
ATGGGCTTCAGCTTGCCCCCTGGAATGTAAAAGCTTTCTAGACCAT
BS23933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wbp2-RC | 1014 | CG11009-PC | 1..1014 | 17..1030 | 4965 | 99.3 | Plus |
| Wbp2-RB | 1014 | CG11009-PB | 1..1014 | 17..1030 | 4965 | 99.3 | Plus |
| Wbp2-RG | 1029 | CG11009-PG | 1..1009 | 17..1025 | 4940 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wbp2-RC | 1751 | CG11009-RC | 109..1125 | 14..1030 | 4980 | 99.3 | Plus |
| Wbp2-RB | 1758 | CG11009-RB | 109..1125 | 14..1030 | 4980 | 99.3 | Plus |
| Wbp2-RG | 1369 | CG11009-RG | 109..1120 | 14..1025 | 4955 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12851308..12851722 | 611..1025 | 2030 | 99.3 | Plus |
| 3L | 28110227 | 3L | 12850498..12850797 | 73..372 | 1500 | 100 | Plus |
| 3L | 28110227 | 3L | 12850915..12851153 | 373..611 | 1135 | 98.3 | Plus |
| 3L | 28110227 | 3L | 12850273..12850331 | 14..72 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..192 | 686..739 | 116 | 72.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9222 | 686..739 | 116 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1031..1090 | 661..721 | 113 | 67.2 | Plus |
BS23933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:33 Download gff for
BS23933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11009-RC | 117..1128 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:32 Download gff for
BS23933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wbp2-RB | 117..1128 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:25 Download gff for
BS23933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wbp2-RB | 112..1123 | 17..1028 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:25 Download gff for
BS23933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12850276..12850331 | 17..72 | 100 | -> | Plus |
| 3L | 12850498..12850797 | 73..372 | 100 | -> | Plus |
| 3L | 12850915..12851153 | 373..611 | 98 | -> | Plus |
| 3L | 12851309..12851724 | 612..1028 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:32 Download gff for
BS23933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12843376..12843431 | 17..72 | 100 | -> | Plus |
| arm_3L | 12843598..12843897 | 73..372 | 100 | -> | Plus |
| arm_3L | 12844015..12844253 | 373..611 | 98 | -> | Plus |
| arm_3L | 12844409..12844824 | 612..1028 | 99 | | Plus |
BS23933.pep Sequence
Translation from 16 to 1029
> BS23933.pep
MSVNTAHANNGVLIHAGEYILLHSDSVSMEFSGQDNPIFKGSKGGRIYLT
SHRMIFNSKKSSDSMQSFSAPFVALSDVEIEQPVFGANYIKGKVRAQPNG
NYVGEVKFKLHFKAGGAIEYGQALLRSAKTAMNNYHRGGLAGDDPPPYQP
AGSWNEAPPPAYQPPPGYYGWLPQHDAFSGPAPNTVYMSDNPPPYPGIAP
PAHQPAPQQPQAPSSNEPNWYGFSAPPPQQQQQQPGYGPQGWAGGYVQPP
PYASCAPNCPPQPPYAAPAQTYNGPQPYGGYGNVPGGFNTPGFQQPNGNP
NGYPGGPPPPGQQAAGAAGGAAASGASFMGFSLPPGM*
BS23933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wbp2-PC | 337 | CG11009-PC | 1..337 | 1..337 | 1888 | 100 | Plus |
| Wbp2-PB | 337 | CG11009-PB | 1..337 | 1..337 | 1888 | 100 | Plus |
| Wbp2-PG | 342 | CG11009-PG | 1..336 | 1..336 | 1883 | 100 | Plus |
| Wbp2-PE | 384 | CG11009-PE | 1..336 | 1..336 | 1883 | 100 | Plus |
| Wbp2-PF | 199 | CG11009-PF | 1..198 | 1..198 | 1075 | 100 | Plus |
