BS23940.complete Sequence
890 bp assembled on 2011-02-03
GenBank Submission: KX803353
> BS23940.complete
GAAGTTATCAGTCGACATGAACATGAAGCCCGACATCCTAGCGCTCTGCA
TCCTGGCTACCACGATCCTGTGCAGCAGGACGCGTCACGTCGCCGGCTTC
CTGACTGCACAGTCCACCGCCAGCGGAGGAGCAGGCGGAGCAAACGGTGC
CAAAGTGGGTGACCATCAGGGCGTGGCGTCCGTACCACAACGTCTTCATT
TGCCCGTTCTAGCGGTCGGGGGCGGACCCGTTCGCCAAGGACCCGCTCTG
CCCGGCGATGTCCTGGATGCCCAGGAACGAGCTGTTTACGATCCCGGCGA
TGAATTACTCCGCGCCCAGGAGCTCGGATTGGCAGTGGTTCCTCAAGGTC
CCGACTACGCGGATGCGGTGTACAACGAACTCGAGCTGGCCAGCAAGTTC
GAGGTGCTCAAGAAGATGGAGGAGGATTTGCGTGCCGAGCAGGAGCTGGT
GGACAAATCCGCTTTGCTCATGAAAATGCTGGAGGATCCCTCATTGGAAA
CCTTGCCCTTGGTCTACGTGGAGGAGGAGGAGCCGGAGGCTGTGATTCCT
TCCGGCGGAGCCGAGGACTACGCCGACTTGGAGAACGCCGTTCAGGATTT
GGTTTTGGGCCAGAGCAAATCCAAGCGTTCGCGCTACTATCGAAGGTATC
CATGGAAGCGTCACAACAAGAATCGCGGTTCTTACATGAATTCTATCAAC
AGCAACTATGAACCGGAATTGCGTTATGCCTGCACACCTAGTAAGGAGGA
TATATTCAAGCTGCTGGTCAATCTGCACGAGAATCGCAAGGGCAATCACA
GCAAGACGGTTAACTTCTGCAATCGAAAGCGTCCGGCCAAGGCGGTCTTC
ACCAACATTAGGTTCCTGGGCTAAAAGCTTTCTAGACCAT
BS23940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7191-RA | 858 | CG7191-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
| CG7191-RB | 834 | CG7191-PB | 1..662 | 17..678 | 3310 | 100 | Plus |
| CG7191-RB | 834 | CG7191-PB | 662..834 | 702..874 | 865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7191-RA | 1643 | CG7191-RA | 149..1006 | 17..874 | 4290 | 100 | Plus |
| CG7191-RB | 1619 | CG7191-RB | 149..810 | 17..678 | 3310 | 100 | Plus |
| CG7191-RB | 1619 | CG7191-RB | 810..982 | 702..874 | 865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7771320..7771605 | 17..302 | 1430 | 100 | Plus |
| 2L | 23513712 | 2L | 7774200..7774396 | 678..874 | 985 | 100 | Plus |
| 2L | 23513712 | 2L | 7773463..7773658 | 483..678 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 7773068..7773251 | 302..485 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:06:03 has no hits.
BS23940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:33 Download gff for
BS23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 128..983 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:58 Download gff for
BS23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 149..1004 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:29 Download gff for
BS23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 149..1004 | 17..872 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:29 Download gff for
BS23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7773465..7773658 | 485..678 | 100 | -> | Plus |
| 2L | 7774201..7774394 | 679..872 | 100 | | Plus |
| 2L | 7773069..7773250 | 303..484 | 100 | -> | Plus |
| 2L | 7771320..7771605 | 17..302 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:58 Download gff for
BS23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7774201..7774394 | 679..872 | 100 | | Plus |
| arm_2L | 7771320..7771605 | 17..302 | 100 | -> | Plus |
| arm_2L | 7773069..7773250 | 303..484 | 100 | -> | Plus |
| arm_2L | 7773465..7773658 | 485..678 | 100 | -> | Plus |
BS23940.pep Sequence
Translation from 16 to 873
> BS23940.pep
MNMKPDILALCILATTILCSRTRHVAGFLTAQSTASGGAGGANGAKVGDH
QGVASVPQRLHLPVLAVGGGPVRQGPALPGDVLDAQERAVYDPGDELLRA
QELGLAVVPQGPDYADAVYNELELASKFEVLKKMEEDLRAEQELVDKSAL
LMKMLEDPSLETLPLVYVEEEEPEAVIPSGGAEDYADLENAVQDLVLGQS
KSKRSRYYRRYPWKRHNKNRGSYMNSINSNYEPELRYACTPSKEDIFKLL
VNLHENRKGNHSKTVNFCNRKRPAKAVFTNIRFLG*
BS23940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7191-PA | 285 | CG7191-PA | 1..285 | 1..285 | 1474 | 100 | Plus |
| CG7191-PB | 277 | CG7191-PB | 1..277 | 1..285 | 1415 | 97.2 | Plus |
