Clone BS23941 Report

Search the DGRC for BS23941

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:239
Well:41
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)35Di-RB
Protein status:BS23941.pep: full length peptide match
Sequenced Size:449

Clone Sequence Records

BS23941.complete Sequence

449 bp assembled on 2011-01-28

GenBank Submission: KX800400

> BS23941.complete
GAAGTTATCAGTCGACATGGTAGCTGGTGGTGCCTCGGAAACGGGCGGCG
TGAAGCCGATGGTAATTGCGGGCCGCATGGTGCGGGAGCGTGAGCGCCTG
ATCGGCATGTCGCCGGAGGAGCGCGCCTGGCGCAAACAGTGGCTGAAGGA
CCAGGAGCTGCACCATGGACCCCGCAAGGTGCCCGCCCTGGAGCTGGAGC
TGAACAACCCCATCAAGCGCTTCTACCGCGCTCCCCTCGACAAGGTCTGC
AATGTTTTGGAACCCGTCCTGGGCTTTCAGCGCGCGTACACCGTGCGCTT
CTGGACCGGAAAGGCTCTGCTCGCCCTAACCGGAATCTACGCCGGCGCCT
ACTACTTCAAGTACAACCAGAATGTAAGTAATTGGTCGAGGATTCAAGTT
GGCTATTACTATAAGTCATTCCAAATGTACTAAAAGCTTTCTAGACCAT

BS23941.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Di-RC 504 CG13240-PC 1..358 17..374 1790 100 Plus
l(2)35Di-RA 504 CG13240-PA 1..358 17..374 1790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Di-RC 992 CG13240-RC 103..460 17..374 1790 100 Plus
l(2)35Di-RA 710 CG13240-RA 103..460 17..374 1790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15750721..15750976 272..17 1280 100 Minus
2L 23513712 2L 15750490..15750652 433..271 815 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:05:22 has no hits.

BS23941.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:34 Download gff for BS23941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RB 79..493 17..431 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:02 Download gff for BS23941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 103..460 17..374 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:58 Download gff for BS23941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 103..460 17..374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:58 Download gff for BS23941.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15750492..15750651 272..431 100 <- Minus
2L 15750722..15750976 17..271 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:02 Download gff for BS23941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15750492..15750651 272..431 100 <- Minus
arm_2L 15750722..15750976 17..271 100   Minus

BS23941.pep Sequence

Translation from 16 to 432

> BS23941.pep
MVAGGASETGGVKPMVIAGRMVRERERLIGMSPEERAWRKQWLKDQELHH
GPRKVPALELELNNPIKRFYRAPLDKVCNVLEPVLGFQRAYTVRFWTGKA
LLALTGIYAGAYYFKYNQNVSNWSRIQVGYYYKSFQMY*

BS23941.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Di-PC 167 CG13240-PC 1..123 1..125 638 96.8 Plus
l(2)35Di-PA 167 CG13240-PA 1..123 1..125 638 96.8 Plus