BS23942.complete Sequence
1166 bp assembled on 2011-01-28
GenBank Submission: KX801735
> BS23942.complete
GAAGTTATCAGTCGACATGTTGACTGGTTCAGGGCATTGCCAAGTGGGAT
ACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTCG
GTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCTA
TTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGAC
ACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAAC
GATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCTC
CTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAGT
ATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGGA
GAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCGT
CAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCCA
CGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGAC
CTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAACA
CAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAAT
TGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAGC
CGCAACAAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGTA
CATGATGCTTTTTAATAGTCTGGAGCGTCAGCGTGATTTCACGCGGTTTC
GCGAAGATGTGGAGTGTTTAAGGCTGCCGCAGTTCGTTAATGTTCTGGAT
GAGGCCAGAATGCTGGCTGTGATCTACTTAAAGAGCTTCCGAGCGGCCTG
GATAGACTACAGCGCCTGGATCAACTCGCCTCCACAGAACAGTGGGATAT
ACGATCAGGAAAATGGCGTCCTTCAAAAGTACCATCTTGACAACAAGCGT
ATATTTTTTACTCTATACGCTCAGAACTTCTGTGAGTTTGGGAAGGATCT
GGCCGAGCATGTCTTCTATCTGGGCCTTAAACAGAACAAGGACTTTTACG
ACATATACTCTTGTGGATTCCAAACGGAAAACCCTATGACTTGTGTTTAA
AAGCTTTCTAGACCAT
BS23942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1092-RD | 1185 | CG1092-PD | 52..1185 | 17..1150 | 5655 | 99.9 | Plus |
| CG1092-RC | 1185 | CG1092-PC | 52..1185 | 17..1150 | 5655 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1092-RD | 1310 | CG1092-RD | 74..1210 | 17..1153 | 5670 | 99.9 | Plus |
| CG1092-RC | 1492 | CG1092-RC | 256..1392 | 17..1153 | 5670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4267260..4268216 | 197..1153 | 4770 | 99.9 | Plus |
| 3R | 32079331 | 3R | 4267025..4267206 | 17..198 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:05:48 has no hits.
BS23942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:35 Download gff for
BS23942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1092-RA | 77..1203 | 22..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:13 Download gff for
BS23942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1092-RC | 261..1387 | 22..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:09 Download gff for
BS23942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1092-RC | 261..1387 | 22..1148 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:09 Download gff for
BS23942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4267030..4267205 | 22..197 | 100 | -> | Plus |
| 3R | 4267261..4268211 | 198..1148 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:13 Download gff for
BS23942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 92752..92927 | 22..197 | 100 | -> | Plus |
| arm_3R | 92983..93933 | 198..1148 | 99 | | Plus |
BS23942.pep Sequence
Translation from 16 to 1149
> BS23942.pep
MLTGSGHCQVGYVRHLSELRIRELEKLSVRIQGSINTEKYACESYFDYVC
SRNRPLFSIMGHMPQMGDLMQLLTELQNDPEPFEAKQKTLDFFISCNVHH
ALEDCYRETYEYFKPLFGYIVTKNMLNGESHELDDFLGILDRFVVRFQKD
RESNPILSKLATYKQKFKTPRVYFHARDLSREYKDLRIYRESYEHNVRNL
EQHRKLNSTYELGVQRTMLDWSMYLFQSRNKPMSYFYSTFTVHLYMMLFN
SLERQRDFTRFREDVECLRLPQFVNVLDEARMLAVIYLKSFRAAWIDYSA
WINSPPQNSGIYDQENGVLQKYHLDNKRIFFTLYAQNFCEFGKDLAEHVF
YLGLKQNKDFYDIYSCGFQTENPMTCV*
BS23942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1092-PD | 394 | CG1092-PD | 18..394 | 1..377 | 2024 | 100 | Plus |
| CG1092-PC | 394 | CG1092-PC | 18..394 | 1..377 | 2024 | 100 | Plus |
