BS23946.complete Sequence
2207 bp assembled on 2011-02-18
GenBank Submission: KX803448
> BS23946.complete
GAAGTTATCAGTCGACATGACCAAGGTGCAAAAAGAGGTGCGATGCGACC
ATTGCGGCACAAGCCAAGGGTCCAAGAGTGTTTTTTCAGGTCAGAAGGTG
TTCCTGGGCAGGAAAATAACAGACGTACTGGAGACCATCACCCACAGAAG
CATCCCATCATCCTTGCCCATCAAGATATGCTTCGTCTGCACCTCCACAT
TCATGTCCAGCGCGGCACTAATCGAGAAGGTCCGCGAGACGGTGGACAGG
GTACAGGAGCAGCCCGCCAAGAAGACTAAGGTAGCGGAAATAGAGGAGCC
ATCGACACAGGAAAGCGATAAGAAGGCGGTTAAGGTGCCAAAAAAGAACA
CCACCCTCCGTCAGCGCAGCAAGTCCATAGCAGCTTTCCCGCCAAGCTTT
GTGAATGGAGCTAATACTAATACAGAAATCGAGATCATTAGTGCTTCGCC
CAAGAAACTCGATAAGACCCCTAAAAAGCAGATATCTCGACTCTTCGAGG
ATAATCTTAACGATTCGGTTAAGCTGACGCCCGCCAAAGAGGTGTCGTCT
ACTAAAAAGGCTTTCCTTAATCTCTTTGGCAACGGCGGCAACGATGCCAT
CGAAGTACTGACCGAGAGCGAGGAAGAGGAGGACTCGGATAAAGGTCCTA
TCACCATTAACACAAATAACTTTCAGTGTCCAGAGTGCGAATTTCACGCA
AAGTTTCCCAAACCGTACAAGGAGCATCTGCAGAAGGAGCACGGTCTTCA
AAGACCACGCATATACCCCTGTACCTTGTGTATTAAGACTTTTGGAGTGC
TTAAGACTTTGAAAAATCATTTAAGGGACACTCACTCACGCACTTTTGAA
AGCGAGGCTAAGACTAAGGCGAAGGAAAGCAAGGAAAAAGAGGCTAAGTC
AGGGGCCAAGAATAAAATTGACGCAAAGGCAAAGGAGACCAATGCTGTGA
GTCAAAGGAAGAAGCCAAAAGAAAAAAAGTCCAAAGAGAAAAAGACAGAG
ATCAAATGTAATGTTGAAACCAAAGTGGTTGACGAAATCGACGACCAAGT
GAACAACAAAAAGGGCACAGATAGTGAGGACGCAGACCAGACCCAGGCTA
CCAAAATCGCCTCCTTTAAAGCGCTAAATGAGTCATTAATGAAGAAAAGG
ATGTTAGAGAACGTGATCGACTCGGAATATACATTTGCCATCAATGGATC
CAGCGCCTCCACTCCCAGGGCGGATTCGAATAATTTTCAGTGCGAGATCT
GCGACTGTGAGCTGATGACCGCCAAGCAGATGCAGGAGCACATGAAGACC
GTCCACAGCATCGACAAGCCAAAGGTTTTCAAGTGCCACGTCTGCGAGAA
GAGTTTGGCTACCAAACAGTCGCTGAAAACGCACATGACTCTACATGCCG
ACGGTGCTGAAGCGCCGAACTCCAGCAAGCGAAAGATTCTGCAGGACGAG
GATGAGGACGTAGACATTCTGGGTACGACTCAGATTGAAAACACGGCCGA
GAAGGTTGAAGGACCTAAGAAATCACAACAAAGCCCTACTAAAGCCGCAA
AGTTCACCAACCGAAAGATTCTGCAAGAAGAGGATGAGGTTGTGGAAATT
GTGGACGCTTTTAAGACTGACAACACCGCGGAGGATGATGAAGGACCCGC
AGAAGAAAAGATTATACGATCCAGGAACAACATTCAGCACCAGGTCGATG
GAGGCATGATTGCACCTCGGTCGCCAGCTAAAAAGACAAAGAAGACCAGT
CACGTAGATCTGTCTGTGTCCACAACCAATGGCAATTCGCCTGCAAAGTC
AGAAAAACGAAAAAAACAAGACAAATCTGAGGACACGCTCCCCTCATCTG
ATGTAGACATAGTGGAAGAAATCAACTACAACGTGCGGCCGCACAAAAAG
GCTCGCCTGGAGTCCATTGGTGACTCAACAGCCGACGAGTCGACCCTCAG
CTGCGACCGGTGCGGGAAGTTCGTCAAATCGCGTCAACGCTTGGACTCGC
ACATGGAGAAAAAGCACGCCGCCAAACTACAGTGCACCCTATGCAAGGAA
GTCTACCAGAACCAAATGGATTACGTGGCTCACTTCTCGAACTGTGGTTC
CGAAGGTGGACTTCCATGCGGCGTAGCCAATTGCAAGAAGGTCTTCACGG
AGGCCAACTTCCTATCCTCGCACCTGCGCAAGCGCCACTAGAAGCTTTCT
AGACCAT
BS23946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RC | 2175 | CG2199-PC | 1..2175 | 17..2191 | 10875 | 100 | Plus |
| CG2199-RA | 2175 | CG2199-PA | 1..2175 | 17..2191 | 10875 | 100 | Plus |
| CG2199-RB | 2202 | CG2199-PB | 28..2202 | 17..2191 | 10875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RC | 2640 | CG2199-RC | 104..2278 | 17..2191 | 10875 | 100 | Plus |
| CG2199-RA | 2846 | CG2199-RA | 310..2484 | 17..2191 | 10875 | 100 | Plus |
| CG2199-RB | 2576 | CG2199-RB | 40..2214 | 17..2191 | 10875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1339822..1341861 | 2191..152 | 10200 | 100 | Minus |
| 3L | 28110227 | 3L | 1341928..1342062 | 151..17 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:09:36 has no hits.
BS23946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:29 Download gff for
BS23946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RA | 308..2482 | 17..2191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:19 Download gff for
BS23946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 40..2214 | 17..2191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:11 Download gff for
BS23946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 40..2214 | 17..2191 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:11 Download gff for
BS23946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1339822..1341861 | 152..2191 | 100 | <- | Minus |
| 3L | 1341928..1342062 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:19 Download gff for
BS23946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1339822..1341861 | 152..2191 | 100 | <- | Minus |
| arm_3L | 1341928..1342062 | 17..151 | 100 | | Minus |
BS23946.pep Sequence
Translation from 16 to 2190
> BS23946.pep
MTKVQKEVRCDHCGTSQGSKSVFSGQKVFLGRKITDVLETITHRSIPSSL
PIKICFVCTSTFMSSAALIEKVRETVDRVQEQPAKKTKVAEIEEPSTQES
DKKAVKVPKKNTTLRQRSKSIAAFPPSFVNGANTNTEIEIISASPKKLDK
TPKKQISRLFEDNLNDSVKLTPAKEVSSTKKAFLNLFGNGGNDAIEVLTE
SEEEEDSDKGPITINTNNFQCPECEFHAKFPKPYKEHLQKEHGLQRPRIY
PCTLCIKTFGVLKTLKNHLRDTHSRTFESEAKTKAKESKEKEAKSGAKNK
IDAKAKETNAVSQRKKPKEKKSKEKKTEIKCNVETKVVDEIDDQVNNKKG
TDSEDADQTQATKIASFKALNESLMKKRMLENVIDSEYTFAINGSSASTP
RADSNNFQCEICDCELMTAKQMQEHMKTVHSIDKPKVFKCHVCEKSLATK
QSLKTHMTLHADGAEAPNSSKRKILQDEDEDVDILGTTQIENTAEKVEGP
KKSQQSPTKAAKFTNRKILQEEDEVVEIVDAFKTDNTAEDDEGPAEEKII
RSRNNIQHQVDGGMIAPRSPAKKTKKTSHVDLSVSTTNGNSPAKSEKRKK
QDKSEDTLPSSDVDIVEEINYNVRPHKKARLESIGDSTADESTLSCDRCG
KFVKSRQRLDSHMEKKHAAKLQCTLCKEVYQNQMDYVAHFSNCGSEGGLP
CGVANCKKVFTEANFLSSHLRKRH*
BS23946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-PC | 724 | CG2199-PC | 1..724 | 1..724 | 3736 | 100 | Plus |
| CG2199-PA | 724 | CG2199-PA | 1..724 | 1..724 | 3736 | 100 | Plus |
| CG2199-PB | 733 | CG2199-PB | 10..733 | 1..724 | 3736 | 100 | Plus |
