BS23950.complete Sequence
1076 bp assembled on 2011-02-03
GenBank Submission: KX802683
> BS23950.complete
GAAGTTATCAGTCGACATGTCGGTAACATCTTCGATTGAGAAGCCAACAA
CCACAGCAAGTGCAATTCAGCAACAGTATCAGCATCAGCAGCAGCAACAG
CAACAGAAGCCACAACAGCAGCAACAGCAGGATAAAAGCAGCACCATCGC
AATCGCAGCAGCAGCAGGACAGCAACAAAAGCGCAAATCCCTGAGTTCCA
AGCGCTCGTATTCGCTATCCTCGTCGAGCGCCTCCAGTTCTGGTTCCTTT
GGGGCGATAAGGTCTGCGACATCGCCACTGGTCACCACCGCCGAGAGGGA
GAAAGATAAGGAGAAGAGCTCCTCCTCGGCCAGCAATAGCCACCATCAAC
ATCATCAGCTTCATCAACACCAACATCATCATCAGCAGCAGCAGTCGCAG
CAGCAGCAGCAATCCTTTTTGCCGTACTCATATTGCACCGATACCATAGC
AGCAGTACATCATCAACGACAGTCGTACGCGCTGGTCCAGAAGCCCCCAT
CGTTGCGCTACCAGGGAAAGCCCCATCATCAGCTGAGCAACTTCTCGCCC
ACGATGACCTCCTCGGAACCCTCATCCCCATTGGCCGCCGATGGTTGCGG
ATCCGGAATCCTTAGCCCATCGGAGGTCGCCACCCATTGTTGCGCCAATG
TCAAGGCCAATATCACCACCCCATTGGCCACCACCACACAGAAAATGCAC
CGAACAATACCATCTGATAAAATTAACCTACGCCTCATTCTTGTTAGTGG
TAAAACAAAAGAGTTTATTTTTAGCCCTTCAGATTCCGCAGGTGATATTG
CACAAACAGTATTTGATAATTGGCCAGAAGATTGGACCCACGAAACTGTG
TCGAAAGCCGAAATCTTGCGCTTAATTTATCAAGGTCGTTTTCTTCATTG
CAATGTAACCTTAGGAGCACTGGGACTTCCATTAGGCAAAACGACTGTTA
TGCATTTAGTGCCACGTGATAATTTGCCAGAGCCCAATTCACAAGATCAA
AGACAAAATAGTAAAGGCGGTTCTGGACGATGCTGTTCGACAAATTGCTC
TATTTTGTAAAAGCTTTCTAGACCAT
BS23950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UBL3-RC | 1044 | CG9038-PC | 1..1044 | 17..1060 | 5220 | 100 | Plus |
| UBL3-RB | 1044 | CG9038-PB | 1..1044 | 17..1060 | 5220 | 100 | Plus |
| UBL3-RA | 1044 | CG9038-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UBL3-RC | 2160 | CG9038-RC | 479..1527 | 12..1060 | 5230 | 99.9 | Plus |
| UBL3-RB | 1677 | CG9038-RB | 580..1628 | 12..1060 | 5230 | 99.9 | Plus |
| UBL3-RA | 2250 | CG9038-RA | 569..1617 | 12..1060 | 5230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15851585..15852294 | 721..12 | 3535 | 99.9 | Minus |
| X | 23542271 | X | 15850546..15850712 | 995..829 | 835 | 100 | Minus |
| X | 23542271 | X | 15851088..15851196 | 830..722 | 545 | 100 | Minus |
| X | 23542271 | X | 15850364..15850430 | 1060..994 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2873 | 45..412 | 159 | 54.8 | Plus |
BS23950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:31 Download gff for
BS23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UBL3-RC | 474..1515 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:30 Download gff for
BS23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UBL3-RA | 574..1615 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:08 Download gff for
BS23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UBL3-RA | 574..1615 | 17..1058 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:08 Download gff for
BS23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15851088..15851196 | 722..830 | 100 | <- | Minus |
| X | 15850366..15850428 | 996..1058 | 100 | <- | Minus |
| X | 15850546..15850710 | 831..995 | 100 | <- | Minus |
| X | 15851585..15852289 | 17..721 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:30 Download gff for
BS23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15744399..15744461 | 996..1058 | 100 | <- | Minus |
| arm_X | 15744579..15744743 | 831..995 | 100 | <- | Minus |
| arm_X | 15745121..15745229 | 722..830 | 100 | <- | Minus |
| arm_X | 15745618..15746322 | 17..721 | 100 | | Minus |
BS23950.pep Sequence
Translation from 16 to 1059
> BS23950.pep
MSVTSSIEKPTTTASAIQQQYQHQQQQQQQKPQQQQQQDKSSTIAIAAAA
GQQQKRKSLSSKRSYSLSSSSASSSGSFGAIRSATSPLVTTAEREKDKEK
SSSSASNSHHQHHQLHQHQHHHQQQQSQQQQQSFLPYSYCTDTIAAVHHQ
RQSYALVQKPPSLRYQGKPHHQLSNFSPTMTSSEPSSPLAADGCGSGILS
PSEVATHCCANVKANITTPLATTTQKMHRTIPSDKINLRLILVSGKTKEF
IFSPSDSAGDIAQTVFDNWPEDWTHETVSKAEILRLIYQGRFLHCNVTLG
ALGLPLGKTTVMHLVPRDNLPEPNSQDQRQNSKGGSGRCCSTNCSIL*
BS23950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UBL3-PC | 347 | CG9038-PC | 1..347 | 1..347 | 1804 | 100 | Plus |
| UBL3-PB | 347 | CG9038-PB | 1..347 | 1..347 | 1804 | 100 | Plus |
| UBL3-PA | 347 | CG9038-PA | 1..347 | 1..347 | 1804 | 100 | Plus |
| org-1-PB | 699 | CG11202-PB | 397..608 | 2..221 | 175 | 29.9 | Plus |
| org-1-PA | 699 | CG11202-PA | 397..608 | 2..221 | 175 | 29.9 | Plus |
