BS23952.complete Sequence
1190 bp assembled on 2011-02-18
GenBank Submission: KX803257
> BS23952.complete
GAAGTTATCAGTCGACATGCATCTGAACCATGCGACAGCCGCCACGGCAG
CCATGGCCAACTATCAGCACTACCAACTGCCAGCCTCCCATGGCGGTGGC
GGCGGAGGAGGAGGTGGCGGTGGCGGTGGAGGAGGGAGTAATGGTGGATC
TGGACCGGGTCCCAACTCGGGACAGCAGCAGCCCACCACACTGGCCAGCC
TGCAACAGAGTCCCTTTGCGCTGCATCAACTCACCGCCGTGCAGGCCATC
CAGCACCCTACCCACCAAGCCATGCTCCATCCACAGCACCCGCTGGTCCA
TTTGCTGGACATATCCACTACAACAGCGAACAGTGGCGGAGGAGGCGGGG
GCAGCCACACGCCCATTTCTCCTATGAAACAGGAGGTGCAGAGCGTGATT
AGCGAGGAGGAGGTGGTGGTGGACGATCCGCGCAAGAAGAAACAGTGCCA
CGTGTGCAAGAACAAGTTCCGGCAGCTGACCACGTTACGCAACCACATGA
AGATCCACACGGACGAGCGGCCCTACAAGTGCAAACACTGCGACAAGGCC
TTCCGCCAGATCTCGACGCTAACCAACCACGTGAAAATCCACACCGGAGA
AAAGCCGTTCACCTGCAACATCTGCGCCAAGGACTTTCGCCAGCAGAGCA
CCTTGATCAATCACATCAAGACGCACAAGGCGGCGGAGTCCAGCACGCCA
ACTTCCCTGTTGAACTATCAGCCGCAGACGGGCAGTGGCAAACACCGAAA
GTCCCAGATGCACCAGGCCTACCAGCAGCAGCATCAGCGCGTCCAAATCT
CAAAGACCTTGTATTCCGGCAGCTACAGCTCGCCGGCGGCCGAGGAGCTG
GTGAAGCCGTTCCAGTGTAGCGTTTGCAAGCGCCGCTTCCCGCAGCTGAG
CACGCTGCACAACCACGAGCGGACCCACATCGATCCTAAGCCGTACAAGT
GCGAAACGTGTGACAAGTCCTTTAGCCAGCTGGCGACGCTGGCCAACCAC
AAGAAGATCCACACGGGCGACAAGCCGTACACGTGTTCCTACTGCCACAT
GCAGTTCCGCCAGCAGAGCACCCTTACCAACCACCTCAAGACGCACACGC
ATCAGATAGCGCCTGGAGGCGTCGGTGGAGCAGGAGGCGGCGGAGGCGCC
GTCACAGCCACAGCTTTTATTTAAAAGCTTTCTAGACCAT
BS23952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4360-RB | 1158 | CG4360-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
| CG4360-RA | 1671 | CG4360-PA | 1..1147 | 17..1163 | 5735 | 100 | Plus |
| CG4360-RB | 1158 | CG4360-PB | 504..661 | 940..1097 | 220 | 75.9 | Plus |
| CG4360-RB | 1158 | CG4360-PB | 924..1081 | 520..677 | 220 | 75.9 | Plus |
| CG4360-RA | 1671 | CG4360-PA | 924..1081 | 520..677 | 220 | 75.9 | Plus |
| CG4360-RA | 1671 | CG4360-PA | 504..661 | 940..1097 | 220 | 75.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4360-RB | 3569 | CG4360-RB | 467..1626 | 16..1175 | 5800 | 100 | Plus |
| CG4360-RA | 3493 | CG4360-RA | 467..1614 | 16..1163 | 5740 | 100 | Plus |
| CG4360-RB | 3569 | CG4360-RB | 971..1128 | 940..1097 | 220 | 75.9 | Plus |
| CG4360-RB | 3569 | CG4360-RB | 1391..1548 | 520..677 | 220 | 75.9 | Plus |
| CG4360-RA | 3493 | CG4360-RA | 971..1128 | 940..1097 | 220 | 75.9 | Plus |
| CG4360-RA | 3493 | CG4360-RA | 1391..1548 | 520..677 | 220 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20326873..20327537 | 680..16 | 3325 | 100 | Minus |
| 3R | 32079331 | 3R | 20326316..20326799 | 1163..680 | 2420 | 100 | Minus |
| 3R | 32079331 | 3R | 20326382..20326539 | 677..520 | 220 | 75.9 | Minus |
| 3R | 32079331 | 3R | 20326876..20327033 | 1097..940 | 220 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:18:39 has no hits.
BS23952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:33 Download gff for
BS23952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RB | 447..1602 | 17..1172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:49 Download gff for
BS23952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RB | 447..1602 | 17..1172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:31 Download gff for
BS23952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RB | 468..1623 | 17..1172 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:31 Download gff for
BS23952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20326316..20326798 | 681..1163 | 100 | <- | Minus |
| 3R | 20326873..20327536 | 17..680 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:49 Download gff for
BS23952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16152038..16152520 | 681..1163 | 100 | <- | Minus |
| arm_3R | 16152595..16153258 | 17..680 | 100 | | Minus |
BS23952.pep Sequence
Translation from 16 to 1173
> BS23952.pep
MHLNHATAATAAMANYQHYQLPASHGGGGGGGGGGGGGGGSNGGSGPGPN
SGQQQPTTLASLQQSPFALHQLTAVQAIQHPTHQAMLHPQHPLVHLLDIS
TTTANSGGGGGGSHTPISPMKQEVQSVISEEEVVVDDPRKKKQCHVCKNK
FRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFTC
NICAKDFRQQSTLINHIKTHKAAESSTPTSLLNYQPQTGSGKHRKSQMHQ
AYQQQHQRVQISKTLYSGSYSSPAAEELVKPFQCSVCKRRFPQLSTLHNH
ERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQ
STLTNHLKTHTHQIAPGGVGGAGGGGGAVTATAFI*
BS23952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4360-PB | 385 | CG4360-PB | 1..385 | 1..385 | 2093 | 100 | Plus |
| CG4360-PA | 556 | CG4360-PA | 1..382 | 1..382 | 2079 | 100 | Plus |
| CG4360-PA | 556 | CG4360-PA | 295..555 | 126..361 | 420 | 36.8 | Plus |
| CG12299-PA | 736 | CG12299-PA | 280..501 | 140..360 | 391 | 36.1 | Plus |
| crol-PC | 756 | CG14938-PC | 154..374 | 99..361 | 387 | 31.2 | Plus |
| crol-PG | 878 | CG14938-PG | 183..496 | 21..361 | 387 | 28.5 | Plus |
| CG4360-PA | 556 | CG4360-PA | 345..554 | 1..220 | 345 | 36.4 | Plus |
| crol-PC | 756 | CG14938-PC | 324..539 | 143..369 | 313 | 26.7 | Plus |
| crol-PC | 756 | CG14938-PC | 352..581 | 143..382 | 271 | 28 | Plus |
| CG12299-PA | 736 | CG12299-PA | 425..521 | 144..236 | 242 | 46.4 | Plus |
| CG12299-PA | 736 | CG12299-PA | 245..333 | 273..361 | 213 | 40.4 | Plus |
| CG12299-PA | 736 | CG12299-PA | 280..393 | 280..364 | 180 | 29.8 | Plus |
