BS23953.complete Sequence
1406 bp assembled on 2011-02-18
GenBank Submission: KX804377
> BS23953.complete
GAAGTTATCAGTCGACATGTCTGGCATTACATTGACCAAATTAACTCAAG
AACGAATTTCCATTCCAAACAACAATGTCATCACGAACGGCGTCGAAAAC
AACATAGATAGTGACACGCTTAGTGGTACTCTGACTCATCTTATGGAAGA
GCATCGCACGCGGGTGGGAGCGGTAACTGGACCAGAAGCAGCGACCACGT
CTACAGACGGCCTAATATCGAATGGAGCAGAGCGACTGCGACTTCAGGGC
AGTCGGCTTCAGACCTCGCGCTTTGCTTGCTTTCGATGTTGCGGAAATAT
TATCACATATCTAGTAAGGCTGCGTAGTACCCCTGAGGAACTGGAGCAGC
GCTACAAGTCCAAAGAGATTGATAAGTTCCTGGAAAAAGAAAAACACACC
TTTCGACGTCAGGTTAAACTGCTGCTTTTAGGTGCTGGGGAATCTGGAAA
ATCAACTTTTCTTAAACAAATGCGAATCATTCATGGAGTTAACTTTGATT
ATGAACTGTTGCTGGAATACCAAAGTGTCATATACCAAAACGTTATAAGA
GGTATGCAAGTCTTGTTGGACGCTCGCGAAAAATTAAACATTGCGTGGGG
AAGTGACGGCAGAGAACAGGATGCTTATGATGCCAAATTAATGGAATGTA
ATTCACTAGACGTACCCAAGTTTATGGAGTATGCACCACCAATAAGTCGA
CTGTGGCAAGATCGTGGCATTAGAAGAGCTTTTGAAAGAAGACGTGAATT
TCAAATTAGCGATTCTGTAAGCTATTTCCTAGACGAGATTCAACGGCTAG
CTACACCTGATTATGTGCCAACGCACAAGGACATATTACATTGCCGGAAG
GCAACTAAGGGTGTTTATGAGTTTTGTGTGAAAGTTCAGAACATTCCATT
TGTGTTCGTTGATGTTGGTGGACAGCGAACTCAACGTCAAAAATGGACTA
GATGTTTTGATAGCTCCGTAACATCCATTATATTTCTCGTATCTAGTTCG
GAGTTCGATCAAGTTCTTGCGGAAGACAGAAAAACCAATCGTCTCGAAGA
GTCAAAGAATATATTTGATACAATTGTCAACAACGCGACATTTAAAGGAA
TATCAATTATTTTATTTCTGAACAAAACAGACTTGCTTGAACAAAAAGTT
TGCAATCCTGAGACTGACATTCGCTGGTACTATCCGCACTTCAACGGAAA
TCCACACTCAGTTTTAGATGTTCAGAACTTCATACTACAAATGTTTATGA
GCGTTCGTCGCAGTAGTAGCATAAGTAGGATCTACCATCATTTTACCACA
GCCATAGATACGCGTAATATTAATGTTGTCTTTAATTCTGTTAAGGACAC
AATACTGCAGCGTAACCTTAATGCTCTTATGCTTCAGTAGAAGCTTTCTA
GACCAT
BS23953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cta-RB | 1374 | CG17678-PB | 1..1374 | 17..1390 | 6870 | 100 | Plus |
| cta-RA | 1374 | CG17678-PA | 1..1374 | 17..1390 | 6870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cta-RB | 2764 | CG17678-RB | 383..1756 | 17..1390 | 6870 | 100 | Plus |
| cta-RA | 2156 | CG17678-RA | 383..1756 | 17..1390 | 6870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22982198..22982595 | 17..414 | 1990 | 100 | Plus |
| 2L | 23513712 | 2L | 22991579..22991943 | 1026..1390 | 1825 | 100 | Plus |
| 2L | 23513712 | 2L | 22949293..22949651 | 1390..1026 | 1580 | 96.2 | Minus |
| 2L | 23513712 | 2L | 22950077..22950284 | 757..550 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 22990946..22991153 | 550..757 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 22949696..22949840 | 1029..885 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 22991390..22991534 | 885..1029 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 22990752..22990895 | 411..554 | 720 | 100 | Plus |
| 2L | 23513712 | 2L | 22950335..22950478 | 554..411 | 705 | 99.3 | Minus |
| 2L | 23513712 | 2L | 22949891..22950022 | 889..758 | 660 | 100 | Minus |
| 2L | 23513712 | 2L | 22991208..22991339 | 758..889 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:21:14 has no hits.
BS23953.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:34 Download gff for
BS23953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cta-RA | 397..1770 | 17..1390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:04 Download gff for
BS23953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cta-RA | 383..1756 | 17..1390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:31 Download gff for
BS23953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cta-RA | 383..1756 | 17..1390 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:31 Download gff for
BS23953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22982198..22982593 | 17..412 | 100 | -> | Plus |
| 2L | 22990754..22990892 | 413..551 | 100 | -> | Plus |
| 2L | 22990948..22991153 | 552..757 | 100 | -> | Plus |
| 2L | 22991208..22991339 | 758..889 | 100 | -> | Plus |
| 2L | 22991395..22991534 | 890..1029 | 100 | -> | Plus |
| 2L | 22991583..22991943 | 1030..1390 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:04 Download gff for
BS23953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22874930..22875325 | 17..412 | 100 | -> | Plus |
| arm_2L | 22883486..22883624 | 413..551 | 100 | -> | Plus |
| arm_2L | 22883680..22883885 | 552..757 | 100 | -> | Plus |
| arm_2L | 22883940..22884071 | 758..889 | 100 | -> | Plus |
| arm_2L | 22884127..22884266 | 890..1029 | 100 | -> | Plus |
| arm_2L | 22884315..22884675 | 1030..1390 | 100 | | Plus |
BS23953.pep Sequence
Translation from 16 to 1389
> BS23953.pep
MSGITLTKLTQERISIPNNNVITNGVENNIDSDTLSGTLTHLMEEHRTRV
GAVTGPEAATTSTDGLISNGAERLRLQGSRLQTSRFACFRCCGNIITYLV
RLRSTPEELEQRYKSKEIDKFLEKEKHTFRRQVKLLLLGAGESGKSTFLK
QMRIIHGVNFDYELLLEYQSVIYQNVIRGMQVLLDAREKLNIAWGSDGRE
QDAYDAKLMECNSLDVPKFMEYAPPISRLWQDRGIRRAFERRREFQISDS
VSYFLDEIQRLATPDYVPTHKDILHCRKATKGVYEFCVKVQNIPFVFVDV
GGQRTQRQKWTRCFDSSVTSIIFLVSSSEFDQVLAEDRKTNRLEESKNIF
DTIVNNATFKGISIILFLNKTDLLEQKVCNPETDIRWYYPHFNGNPHSVL
DVQNFILQMFMSVRRSSSISRIYHHFTTAIDTRNINVVFNSVKDTILQRN
LNALMLQ*
BS23953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cta-PB | 457 | CG17678-PB | 1..457 | 1..457 | 2360 | 100 | Plus |
| cta-PA | 457 | CG17678-PA | 1..457 | 1..457 | 2360 | 100 | Plus |
| Galphaq-PK | 353 | CG17759-PK | 8..347 | 107..451 | 727 | 45.1 | Plus |
| Galphaq-PE | 353 | CG17759-PE | 8..347 | 107..451 | 727 | 45.1 | Plus |
| Galphaq-PC | 353 | CG17759-PC | 8..347 | 107..451 | 727 | 45.1 | Plus |
