BS23954.complete Sequence
2696 bp assembled on 2011-02-18
GenBank Submission: KX800332
> BS23954.complete
GAAGTTATCAGTCGACATGCGTTGCAGTTTGCAAAAGGACTGCGCAGCTC
CCACGCAGGAAAATTTTCGTCAGCAGATGCGTTTCCCAATTGTGATTTCC
CTGCTTTTGCTGCTTTTCTGCAGCGGTGAGAGTGTCGCCGCTGACGCAGC
CAATCAGCTGAAATTTTCCACCACGGAATGTAAACTCAAGGAGCCCATTT
ACGGCAGCACCTTCGACTTCAGTGGTCTCCACTCGGATTTGGCCCATGTG
GTGAAGAGCATGAACATTGGAGGCGACCAATTCGAGTTCAATATATGCGG
AAATCTTTCAAGAACCTGCAATGGGGAAAGTAATGTGGCAGCTTGTCTCA
AAAGACAGGGAAAGGAGTATATTTTGGGTCGTCAGCACGAGTTGTTCTAC
AACAATGGAAATATGTTTCTGAAGTACAAAAGCGGCGCAAAATGCGACAA
TGGCACTGCCGACAAGCCCAACTACCAGCTGCATGTAATGTTCTCCTGCG
ACTATACTTTGGATGCCCAGCCTATGCACGTAACGCCTTACGCCAACGAA
GTGTGTTCTTTTTACATCTCATATAGGACGCCTTTGGCATGCCTATCCAT
TCCCGAGGGTCTACAATCCAATAGTTGCAGAGTGGGCGACACAAAGTCAA
ATGGAACCTTCGATCTGATGCCGCTGAGTGATAGTAACTATCATACGAGC
AATCGTCAAGGCGCCTTCTTTGTGATCAATGTCTGTAAGCCGGTGCTTTA
TGGAGAGAACAGCATGTGTCCGGCAGGCAGTAGCGTTTGTCTATTTGATA
GTAAAGCCACAAATCCAAAAGAACGATTTATCAATTTCGGCAATGTACAA
ACGCATCCGGTGGTGGAGAAAGGGCAGCTACTGCTCAGGCATGAGTCACC
AACGCCATGTGCCAAGAACTCCAGTGCAAACTACACCAGCGTGATTTACT
TTAGCTGTGACAAGTTCATAAGGAATGCCCATCCGGAGTTCGCGGGTCTG
GGAGCCGATTCCTGCACCTATCAGTTCAACTTTGCAACGCCTTTGGCCTG
TAATGATCTCAAACCGTGCACGGCCTTTACCTCGACAAATGAGCTGTTGG
ATCTGAGTTCGCTTAGCTCTAAGCCAGCTCGCACTTTGCTTAAGGATGGC
AAGAACTATACAATTGCTGTGTGCGCACATGCTGGGGCGCCCTGCCAGGA
AAATGGCGGCGCTTGTTACGAGCAGAATTCCACGACCATCAGCCTGGGCA
ACTCCAACTCGCAGCTGCGTTTCAATCAGACCGGTTCGCTGTATTTGCTG
TACGAGGATGGTGCCGAGTGCTCCACAGCAACGGGCATGCGGCGCTGGTC
GACAAAAATCGAGTTTGTCTGTGCGAACAATGCGACGAAGGACAATGGAG
CCAGCACTGCTGGCGGTAGCGATTCTTTGAAAATAATTGAGGACTCCAAT
TGTCAGCTGTTGATCCAATATCAGACGCCGCTTGCCTGCCGGGAGCCGAT
TAGATGCAAGGCAACCACCTATGTGGACCACACAAACGATGGACTGGGCA
GCAGCGGCGACGAGCTGATCGACCTAACGCCATTGATTAGCGCCACCGAC
AACTACGAGGCAAGAGTGGAGCTGCCGGCCAGCATGGAGCACCTGGTGCC
CAAGACGACCAAGTTCTTTTTGAATGTGTGCCGTCCATTAGTGCCCAAAT
ACCAATTAGGCTGTGCCGGCGGATCTGCTGCCTGCATGGCCAAAGTGACT
GCCGCCGGCGCCCCCGAGGAGGAGCGTAGCATGGGCTTTCCTCTGGTGTC
ACTGACGCAACGGAATCGCACCTTCGCCGAGCTGGCTTACTTGAAGGGAG
ACCCCTGTCCCACAGACAACACCTCGGAGCTCTCAACGCACATCCTTTTC
AACTGTAATATGCGTGCCGGTCGGGGACAGCCCGTGCTACGTTCGGTTGA
GGACTGTGCCTATCGGTTCGAGTGGGAGACCAATGTCTTCTGTCCGCCGC
ACGAGTGCACCTTCAGTGCGGACACCTGCGATCTGGTGCACGACGAGCTG
GGTCGTCGTTTCAACTTCAAGAGTGCGCCGTTCACCAAGGATGGCAAGAT
TGAGATTGACTACAACGCCACGAAGATGTCGGTAAACATTTGCGGAGCGC
ATCGCAAGGCAATGACGGACTATTCGCAGGCGCTGGTCAACATATTCTTC
ACACACGAGTCGCCTAATTGCGGTCGGGAAGGCACAATGAACGTCCAGAT
CCGGCTGATATGCAGCGACCAGACCGAGAGCAGCAGTACCATCTCGAGCG
ACCAGCAATGCAATTTGCTTTATGTGCAACGAACGCCGAGCATCTGCGAG
TTCCTTTCCCTCGGCGCAACGCAGCAGAATTTTGAAAGCAATGGCTCCAC
GAGCAGTAGCACCAGCAGCAGCAGCACATCCACCACCACCAGCACGACTA
CCCAGGCATCGCCAGCGGCCATCCTGGGGGCCATTCTCTCGGTGACCTTC
TGCGTGACGTGCCTGGGCCTGTTGGCCTTTTCGCCGGCACGAAGGCAGCG
CATCCGCCGCCTCTTCCGGCGCAGCAACTCCGCGGTGCGATACTCCCGGG
TGCAATCCAATGAGGAGGCCAACCTGCTATTGGAACCCAATGGGGAGTTC
ACCGAAAGCGATGACGACATGCTGCTTTAGAAGCTTTCTAGACCAT
BS23954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lerp-RB | 2664 | CG31072-PB | 1..2664 | 17..2680 | 13320 | 100 | Plus |
| Lerp-RA | 2661 | CG31072-PA | 1..2661 | 17..2680 | 13240 | 99.9 | Plus |
| Lerp-RE | 2757 | CG31072-PE | 1..2452 | 17..2468 | 12260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lerp-RB | 3457 | CG31072-RB | 74..2737 | 17..2680 | 13320 | 100 | Plus |
| Lerp-RA | 3478 | CG31072-RA | 98..2758 | 17..2680 | 13240 | 99.9 | Plus |
| Lerp-RE | 3535 | CG31072-RE | 59..2510 | 17..2468 | 12260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26855843..26856298 | 1663..1208 | 2280 | 100 | Minus |
| 3R | 32079331 | 3R | 26861408..26861691 | 825..542 | 1420 | 100 | Minus |
| 3R | 32079331 | 3R | 26861989..26862208 | 379..160 | 1100 | 100 | Minus |
| 3R | 32079331 | 3R | 26848851..26849031 | 2104..1924 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 26843748..26843916 | 2468..2300 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 26861769..26861934 | 542..377 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 26861201..26861349 | 973..825 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 26849402..26849549 | 1925..1778 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 26843443..26843576 | 2601..2468 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 26848660..26848789 | 2232..2103 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 26861020..26861144 | 1097..973 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 26855573..26855688 | 1777..1662 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 26860843..26860956 | 1209..1096 | 570 | 100 | Minus |
| 2R | 25286936 | 2R | 4783218..4783486 | 1429..1151 | 525 | 82.5 | Minus |
| 3R | 32079331 | 3R | 26862480..26862569 | 160..71 | 450 | 100 | Minus |
| 3R | 32079331 | 3R | 26843182..26843263 | 2680..2599 | 410 | 100 | Minus |
| 3R | 32079331 | 3R | 26846941..26847011 | 2300..2230 | 355 | 100 | Minus |
| 2R | 25286936 | 2R | 4782993..4783079 | 1748..1662 | 345 | 93.1 | Minus |
| 3R | 32079331 | 3R | 26862637..26862693 | 73..17 | 285 | 100 | Minus |
| 2R | 25286936 | 2R | 4780581..4780647 | 2585..2519 | 230 | 89.6 | Minus |
| 2R | 25286936 | 2R | 4780731..4780840 | 2309..2198 | 220 | 83.9 | Minus |
| 2R | 25286936 | 2R | 4783507..4783576 | 1105..1036 | 200 | 85.7 | Minus |
| 2R | 25286936 | 2R | 4783119..4783220 | 1592..1482 | 195 | 84.7 | Minus |
| 2R | 25286936 | 2R | 4782933..4782994 | 2151..2090 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:25:59 has no hits.
BS23954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:35 Download gff for
BS23954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lerp-RB | 37..2700 | 17..2680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:41 Download gff for
BS23954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lerp-RB | 74..2737 | 17..2680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:19 Download gff for
BS23954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lerp-RB | 74..2737 | 17..2680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:19 Download gff for
BS23954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26843445..26843575 | 2469..2599 | 100 | <- | Minus |
| 3R | 26843748..26843916 | 2300..2468 | 100 | <- | Minus |
| 3R | 26846942..26847009 | 2232..2299 | 100 | <- | Minus |
| 3R | 26848661..26848787 | 2105..2231 | 100 | <- | Minus |
| 3R | 26848851..26849030 | 1925..2104 | 100 | <- | Minus |
| 3R | 26849403..26849549 | 1778..1924 | 100 | <- | Minus |
| 3R | 26855573..26855686 | 1664..1777 | 100 | <- | Minus |
| 3R | 26843182..26843262 | 2600..2680 | 100 | <- | Minus |
| 3R | 26855843..26856297 | 1209..1663 | 100 | <- | Minus |
| 3R | 26860844..26860956 | 1096..1208 | 100 | <- | Minus |
| 3R | 26861022..26861143 | 974..1095 | 100 | <- | Minus |
| 3R | 26861201..26861348 | 826..973 | 100 | <- | Minus |
| 3R | 26861408..26861691 | 542..825 | 100 | <- | Minus |
| 3R | 26861770..26861933 | 378..541 | 100 | <- | Minus |
| 3R | 26861991..26862207 | 161..377 | 100 | <- | Minus |
| 3R | 26862480..26862566 | 74..160 | 100 | <- | Minus |
| 3R | 26862637..26862693 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:41 Download gff for
BS23954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22686923..22687070 | 826..973 | 100 | <- | Minus |
| arm_3R | 22668904..22668984 | 2600..2680 | 100 | <- | Minus |
| arm_3R | 22669167..22669297 | 2469..2599 | 100 | <- | Minus |
| arm_3R | 22669470..22669638 | 2300..2468 | 100 | <- | Minus |
| arm_3R | 22672664..22672731 | 2232..2299 | 100 | <- | Minus |
| arm_3R | 22674383..22674509 | 2105..2231 | 100 | <- | Minus |
| arm_3R | 22674573..22674752 | 1925..2104 | 100 | <- | Minus |
| arm_3R | 22675125..22675271 | 1778..1924 | 100 | <- | Minus |
| arm_3R | 22681295..22681408 | 1664..1777 | 100 | <- | Minus |
| arm_3R | 22681565..22682019 | 1209..1663 | 100 | <- | Minus |
| arm_3R | 22686566..22686678 | 1096..1208 | 100 | <- | Minus |
| arm_3R | 22686744..22686865 | 974..1095 | 100 | <- | Minus |
| arm_3R | 22687130..22687413 | 542..825 | 100 | <- | Minus |
| arm_3R | 22687492..22687655 | 378..541 | 100 | <- | Minus |
| arm_3R | 22687713..22687929 | 161..377 | 100 | <- | Minus |
| arm_3R | 22688202..22688288 | 74..160 | 100 | <- | Minus |
| arm_3R | 22688359..22688415 | 17..73 | 100 | | Minus |
BS23954.pep Sequence
Translation from 16 to 2679
> BS23954.pep
MRCSLQKDCAAPTQENFRQQMRFPIVISLLLLLFCSGESVAADAANQLKF
STTECKLKEPIYGSTFDFSGLHSDLAHVVKSMNIGGDQFEFNICGNLSRT
CNGESNVAACLKRQGKEYILGRQHELFYNNGNMFLKYKSGAKCDNGTADK
PNYQLHVMFSCDYTLDAQPMHVTPYANEVCSFYISYRTPLACLSIPEGLQ
SNSCRVGDTKSNGTFDLMPLSDSNYHTSNRQGAFFVINVCKPVLYGENSM
CPAGSSVCLFDSKATNPKERFINFGNVQTHPVVEKGQLLLRHESPTPCAK
NSSANYTSVIYFSCDKFIRNAHPEFAGLGADSCTYQFNFATPLACNDLKP
CTAFTSTNELLDLSSLSSKPARTLLKDGKNYTIAVCAHAGAPCQENGGAC
YEQNSTTISLGNSNSQLRFNQTGSLYLLYEDGAECSTATGMRRWSTKIEF
VCANNATKDNGASTAGGSDSLKIIEDSNCQLLIQYQTPLACREPIRCKAT
TYVDHTNDGLGSSGDELIDLTPLISATDNYEARVELPASMEHLVPKTTKF
FLNVCRPLVPKYQLGCAGGSAACMAKVTAAGAPEEERSMGFPLVSLTQRN
RTFAELAYLKGDPCPTDNTSELSTHILFNCNMRAGRGQPVLRSVEDCAYR
FEWETNVFCPPHECTFSADTCDLVHDELGRRFNFKSAPFTKDGKIEIDYN
ATKMSVNICGAHRKAMTDYSQALVNIFFTHESPNCGREGTMNVQIRLICS
DQTESSSTISSDQQCNLLYVQRTPSICEFLSLGATQQNFESNGSTSSSTS
SSSTSTTTSTTTQASPAAILGAILSVTFCVTCLGLLAFSPARRQRIRRLF
RRSNSAVRYSRVQSNEEANLLLEPNGEFTESDDDMLL*
BS23954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lerp-PB | 887 | CG31072-PB | 1..887 | 1..887 | 4700 | 100 | Plus |
| Lerp-PA | 886 | CG31072-PA | 1..886 | 1..887 | 4683 | 99.9 | Plus |
| Lerp-PE | 918 | CG31072-PE | 1..918 | 1..887 | 4654 | 96.5 | Plus |
| Lerp-PD | 917 | CG31072-PD | 1..917 | 1..887 | 4637 | 96.4 | Plus |
