BS23955.complete Sequence
2738 bp assembled on 2011-02-18
GenBank Submission: KX802791
> BS23955.complete
GAAGTTATCAGTCGACATGCGGGTAGTGGCCATGGTCAGTGGCGGCAAGG
ACAGCTGCTACAACATGATGCAGTGCGTCGCCGAGGGCCACGAAATCGTC
GCCCTGGCCAATCTGCATCCCAAGGACAGAGACGAACTGGACAGCTTCAT
GTACCAGACGGTCGGCCACATGGGCATCGAGATACTGGCCAGCGCCATGG
GATTGCCACTATACCGGCGCGAAACCAAGGGCAAGAGCACCCAGACCGGC
AAGCAATACGTGCCCACCGATGACGACGAGGTCGAGGATCTATACAGTCT
GCTGGAGACATGCAAGCACGAACTTCAGGTGGATGCGGTGGCCGTGGGCG
CCATCCTCTCGGATTACCAACGCGTGCGTGTGGAGAACGTGTGCAGCCGC
CTGAACCTGATATCCCTGGCCTATCTGTGGAGGAGAGATCAGACTGAATT
GCTGCAGGAGATGATCGACTGCCAGGTGCACGCCATCATCATAAAGGTGG
CTGCCCTGGGCCTCGTGCCGGATCGACACCTGGGCAAATCGCTGCGCGAG
ATGCAGCCGCACCTGCTGAAGATGCGCGACAAGTACGGACTGAATGTGTG
CGGCGAGGGTGGCGAGTATGAGACATTCACCCTGGACTGCCCGCTCTTTC
GGCAGCGCATCGTTGTCGAGGACATCCAGACGATAATCAGCAGTGCCGAT
CCCATCTGCCCGGTGGGCTACATCAATTTCACCAAACTGACGCTGCAGCC
AAAGGAGGCGGCGGGCGCGGCCAGCAGCGGCGGCAACGAGGTGGTGTTCG
TGAAGCGTTCACTCGACTATATTAGCGATCTGAACGAATCGACGTACAGC
GACCTCAGTGATCCGGATTTCAGTGAAACAGAACTGGAACTAATCGAAAA
GGAGACCAGGCTGCGCGAATCGCTTAGCCAAAGTGAGCTGATATCGCGCA
GTAACTCCTTTGGTCGCCATCTGGCCGCCACCGCCTCCTCGCCGATACCC
ATTGTCACGAAGAGCGCCAGCGTCGACGAGCCCACAGCGGCGGCGGCGCC
GATACTGGGCGGAGTTGGAGGACCACCAATCTGTTCCACCTCAGCCTGTG
CGTCCATGCTGCTGACAACCACCGCCGACGGCCTGAGCAGCCTGGCCAGC
TCACAGAGCCAGGGCGGTGGCCATGGGCTCGGCAGCAGCACGGCCGCCGT
GTGCGGCTCGCTGTCGCTGGCCATCTCCTCGCTTGGGCTCAGCGCCAATA
CCTGCTGTCATCCGGGAGGAGCTGGAGGAGGAGGAGGAGTTGGAATTGGA
GTAGGAGCAGGAGCAGGAGCAGGAGCACCTTCGGCCACCACACAACCGCC
CAGTCCGCTAAAGTACGAGCGGGAATTCCGTCCACTGGCCAACGAGGCCA
GAGCGGCCATCAATGCCAAGGGCTGGATGTGGCTGGCGGGCATACAGGGC
TCCGGAACGGAGGGCATTGAGCAGGGCATGCAGCAGGCATTGGACACGCT
GCGCGATTTGTGCCAAGCCAAGGGCTACGATCTGCAGGATCTGTGCTATG
TCACGCTCTATGTTCGCTCGATCGGCGAGTATCCCTTGCTGAATCGTGTC
TACCATCGCGCCTTCGACTTTCATAATCCACCGACACGCGTCTGTGTCGA
GTGTCCGCTGCCCGATGGCTGCCATGTGGTGATGGAGGCCATTGCCTACC
GCCAGCCGGTGGCCGGAACGATATCCAGTGCCGAGGAGCGTGATCGCGAG
GGCGAGGAGACTGCGGCGGCGCTGCTCAACGGGCGACGGAACACGATGCA
TGTGCAGGGCATCTCGCATTGGGCGCCGGCCAACATTGGTCCATATAGCC
AGTCAACCAGGATTGGCGACATTACGTATATCTCAGGCCAGATCGCCCTC
GTACCCGGCAGCATGACAATCATCGAGGGCGGCATCCGGCCGCAGTGCAA
GCTCACGTTGCGCCACATCAGCCGGATTGCCAAGGCGATGAACGCCCACG
GCCAGTTGCGTGATGTGGTGCACGGCATCTGCTTTGTGACCCATCCAGCC
TTCATTGGCGAGGCGCGTCGCCAGTGGGAGCGTCGCACCACCAATGCCAT
CATGGACTATATAGTGCTGCCGGCACTGCCGCGTGAGGCACTCGTGGAAT
GGCAGGTGTGGGCGCATACGCACAACGATCGATTCGATTATGAGGAGACT
GGCTGTTCGGTGGGTGACTACACCATTTCGATACGTCGACGATGGAATTA
CGAGAACAATTGTGCGGCTATCGTTTGCTATGTGTCCACTGGCCTGGCCT
CGTCCACCACCCAACTGACGCAGCTGAGCGATGACATTCTAGGGAACCAC
TGCCGTTTGGCGCAAGCGGTTAATGCCGAACATCTGGACGAAATCTTCAC
GTACGTGGTTAATCGTCTGCTAAAGGATTATCCGCTGGCCAAGAAACAGG
CGTCGCAACCGACAAATTCGGCAACTCCACCTGCCACGCCCACGCAACCG
GGCGGCGCTGGCGGAGATCAACAGCAGCCAGTGCCGGCGATCCATCTGAA
ATTGTTCTACCAAGTGAATGCCGCACCGGCAACGGATCTGCTGCTACAGG
CGCTGCACGATTTCCGACTCAAGTGCCAGGATACGGCCGCCATTGTCTAC
ACAGTGCTGCCGGCCTGCAGCCTGCACAACTTCAGTACGTTCCTGTCCAT
TTGCGGGGTGAGGCACGAGTAGAAGCTTTCTAGACCAT
BS23955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1578-RB | 2706 | CG1578-PB | 1..2706 | 17..2722 | 13530 | 100 | Plus |
| CG1578-RC | 2706 | CG1578-PC | 1..2706 | 17..2722 | 13530 | 100 | Plus |
| CG1578-RA | 2706 | CG1578-PA | 1..2706 | 17..2722 | 13530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1578-RB | 4512 | CG1578-RB | 382..3091 | 17..2726 | 13535 | 100 | Plus |
| CG1578-RC | 3741 | CG1578-RC | 460..3169 | 17..2726 | 13535 | 100 | Plus |
| CG1578-RA | 3667 | CG1578-RA | 386..3095 | 17..2726 | 13535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11811651..11812605 | 1449..495 | 4775 | 100 | Minus |
| X | 23542271 | X | 11809927..11810463 | 2726..2190 | 2670 | 99.8 | Minus |
| X | 23542271 | X | 11810929..11811342 | 1861..1448 | 2070 | 100 | Minus |
| X | 23542271 | X | 11810531..11810859 | 2189..1861 | 1645 | 100 | Minus |
| X | 23542271 | X | 11814697..11814883 | 316..130 | 935 | 100 | Minus |
| X | 23542271 | X | 11813286..11813469 | 498..315 | 920 | 100 | Minus |
| X | 23542271 | X | 11815170..11815284 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:27:05 has no hits.
BS23955.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:35 Download gff for
BS23955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 367..3072 | 17..2722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:50 Download gff for
BS23955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 386..3091 | 17..2722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:37 Download gff for
BS23955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 386..3091 | 17..2722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:37 Download gff for
BS23955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11809931..11810463 | 2190..2722 | 100 | <- | Minus |
| X | 11810531..11810858 | 1862..2189 | 100 | <- | Minus |
| X | 11810929..11811341 | 1449..1861 | 100 | <- | Minus |
| X | 11811652..11812603 | 497..1448 | 100 | <- | Minus |
| X | 11813288..11813467 | 317..496 | 100 | <- | Minus |
| X | 11814697..11814881 | 132..316 | 100 | <- | Minus |
| X | 11815170..11815284 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:50 Download gff for
BS23955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11708730..11708914 | 132..316 | 100 | <- | Minus |
| arm_X | 11709203..11709317 | 17..131 | 100 | | Minus |
| arm_X | 11703964..11704496 | 2190..2722 | 100 | <- | Minus |
| arm_X | 11704564..11704891 | 1862..2189 | 100 | <- | Minus |
| arm_X | 11704962..11705374 | 1449..1861 | 100 | <- | Minus |
| arm_X | 11705685..11706636 | 497..1448 | 100 | <- | Minus |
| arm_X | 11707321..11707500 | 317..496 | 100 | <- | Minus |
BS23955.pep Sequence
Translation from 16 to 2721
> BS23955.pep
MRVVAMVSGGKDSCYNMMQCVAEGHEIVALANLHPKDRDELDSFMYQTVG
HMGIEILASAMGLPLYRRETKGKSTQTGKQYVPTDDDEVEDLYSLLETCK
HELQVDAVAVGAILSDYQRVRVENVCSRLNLISLAYLWRRDQTELLQEMI
DCQVHAIIIKVAALGLVPDRHLGKSLREMQPHLLKMRDKYGLNVCGEGGE
YETFTLDCPLFRQRIVVEDIQTIISSADPICPVGYINFTKLTLQPKEAAG
AASSGGNEVVFVKRSLDYISDLNESTYSDLSDPDFSETELELIEKETRLR
ESLSQSELISRSNSFGRHLAATASSPIPIVTKSASVDEPTAAAAPILGGV
GGPPICSTSACASMLLTTTADGLSSLASSQSQGGGHGLGSSTAAVCGSLS
LAISSLGLSANTCCHPGGAGGGGGVGIGVGAGAGAGAPSATTQPPSPLKY
EREFRPLANEARAAINAKGWMWLAGIQGSGTEGIEQGMQQALDTLRDLCQ
AKGYDLQDLCYVTLYVRSIGEYPLLNRVYHRAFDFHNPPTRVCVECPLPD
GCHVVMEAIAYRQPVAGTISSAEERDREGEETAAALLNGRRNTMHVQGIS
HWAPANIGPYSQSTRIGDITYISGQIALVPGSMTIIEGGIRPQCKLTLRH
ISRIAKAMNAHGQLRDVVHGICFVTHPAFIGEARRQWERRTTNAIMDYIV
LPALPREALVEWQVWAHTHNDRFDYEETGCSVGDYTISIRRRWNYENNCA
AIVCYVSTGLASSTTQLTQLSDDILGNHCRLAQAVNAEHLDEIFTYVVNR
LLKDYPLAKKQASQPTNSATPPATPTQPGGAGGDQQQPVPAIHLKLFYQV
NAAPATDLLLQALHDFRLKCQDTAAIVYTVLPACSLHNFSTFLSICGVRH
E*
BS23955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1578-PB | 901 | CG1578-PB | 1..901 | 1..901 | 4708 | 100 | Plus |
| CG1578-PC | 901 | CG1578-PC | 1..901 | 1..901 | 4708 | 100 | Plus |
| CG1578-PA | 901 | CG1578-PA | 1..901 | 1..901 | 4708 | 100 | Plus |
