Clone BS23956 Report

Search the DGRC for BS23956

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:239
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG7453-RA
Protein status:BS23956.pep: gold
Sequenced Size:947

Clone Sequence Records

BS23956.complete Sequence

947 bp assembled on 2011-01-28

GenBank Submission: KX804325

> BS23956.complete
GAAGTTATCAGTCGACATGAAGCTGCTCTATATGCTGTGGCTGCTGAGCA
TCTTGGTCCTGGTCTCAGGCCAGCAGAAGCAGACAGCTAACTCCGCCACC
AAGGACGCCCCAGTGGTGGCCAATGCGACGAACGTGCTGCAGGCCAAAGT
TATTCCAGGATCGAAATTGGAATCTGGATCTCCGGGAGCTGCCAGCCAGC
TGGTGCCGGGTAAGGATGCAGCTGTGTTGCAACAGGACAAGAACTTAAAC
AAAACGGCCACAGCAGAAAATGCAGGTAAAGCCAAAAATCTCACAAACAC
CGATACAGGAGTGCCCACCATTCCTTTGGTCACTTCCAAGCCGGCTGTGG
AGCAAAAGGCGGCCAAGGAGGCGACCAATACGACCTCCACTACAACTTCT
TCCACCACGACCACCACCACCACGGCAAAGCCAGCTGCAGGATCAGCCAT
AGTCACCGAGGGCCAGTCCATGAAGGATGTCACCAAGCCGAGCAACTCGT
CCACCAACGGCGCGGCAATATCCCCGACCAACAGCACCCACACCGCCACA
GCCACCACCAAAACTGTCAATTCAACCATCATCGCAACCACGCCAAAGCC
GAAGAAGCCCCCAGTGGTATTGAGCACTGATATACACCAGGAGGGGGAGG
ATATGGCGGAGCTGGAAAAGAGTCAGGATAAGCCAGGTACAAAGGGCGCT
CCCACCCAGCCATTGGCCACACCACCAGAGCCATTGGTGCAGGGGCTTAC
TGGAAGTAATCTTGCCGATCACGGAGAGAACGGGTATGTGGTACCCATTG
TTACCGTGCTGCTGACCGTTCCGCTGGCCATCGGCGTGGTGACCATCATG
TACCGCCGCTTCCGCGACATGTGGAGCACCAGGCACTACCGTCGCATGGA
CTTCCTGGTGGACGGCATGTACAACGACTGAAAGCTTTCTAGACCAT

BS23956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7453-RA 915 CG7453-PA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7453-RA 1852 CG7453-RA 107..1021 17..931 4575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19180279..19181193 17..931 4575 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:06:55 has no hits.

BS23956.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:37 Download gff for BS23956.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 102..1015 17..930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:39 Download gff for BS23956.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 107..1020 17..930 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:31 Download gff for BS23956.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 107..1020 17..930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:31 Download gff for BS23956.complete
Subject Subject Range Query Range Percent Splice Strand
X 19180279..19181192 17..930 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:39 Download gff for BS23956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19074312..19075225 17..930 100   Plus

BS23956.pep Sequence

Translation from 16 to 930

> BS23956.pep
MKLLYMLWLLSILVLVSGQQKQTANSATKDAPVVANATNVLQAKVIPGSK
LESGSPGAASQLVPGKDAAVLQQDKNLNKTATAENAGKAKNLTNTDTGVP
TIPLVTSKPAVEQKAAKEATNTTSTTTSSTTTTTTTAKPAAGSAIVTEGQ
SMKDVTKPSNSSTNGAAISPTNSTHTATATTKTVNSTIIATTPKPKKPPV
VLSTDIHQEGEDMAELEKSQDKPGTKGAPTQPLATPPEPLVQGLTGSNLA
DHGENGYVVPIVTVLLTVPLAIGVVTIMYRRFRDMWSTRHYRRMDFLVDG
MYND*

BS23956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7453-PA 304 CG7453-PA 1..304 1..304 1533 100 Plus
CG34220-PA 726 CG34220-PA 253..401 91..239 154 26.8 Plus
CG34220-PA 726 CG34220-PA 79..233 80..239 152 27 Plus