BS23957.complete Sequence
1895 bp assembled on 2011-02-18
GenBank Submission: KX805622
> BS23957.complete
GAAGTTATCAGTCGACATGGAATTCGCCGACCTTATAAAGACCCCCAAGC
TGGACGGTGTCCTGCTGCACGACCCATCGAATGCGGGGGCGTCGGGTGCA
ACAGTTGGCACACTGTGCATCACAGGGCACCATTTGCTGCTCAGCGCCCG
CCAGGAAACCAGCCAGGAGCTATGGTTGCTCCACAAGAACATCGACTGTG
TGGAGAAGAAGCCTAGTTTGTCGCAGAATATCGTGGTCGGTGGGATTATC
ACCCTGAAGTGCAAGGACCTGCGCATCATTTCGTTGGAGATAAAGTGCGG
CAAGGAGTTCTTCAACGTGGCCGCATCGCTGGAGGCACTCAGTGCCATCC
AGAACACCGAACTGCTCTATCCATTCTTCTACCGGCCCATGTACTCGATC
CTAGAGGACGGCTACACGATGTTTAGGCCCGAGCTGGAGTTCGCCAAACT
CATAAGCGGGGTTGGCATGGGCGGTGCGTCCTCGCCGAATGTGGCCAACA
TAACAATTTGCATGCCATCAACTTCGACATCGACGTTGACTGTGGGCGCC
GGCATTCCCCATCCTCTGCAAAATGGCTATGCGATAGAAGCCCTTGCGTG
TGGTGTTGGTGGTGTGGGAGGTGGTGCGCTTCAAAGTCCCCAGGCCTCCT
GCGAGTGGCGCATCACCAACGTCAACAGAGACTTCAGCGTCTGTGCCACA
TATGGCGCCACGCTAATTGTACCTAAAGCAATTACGGACGAGCAGATAGT
GCTCTCCGCTGCGTTCCGCGATGGCGGCCGCTTCCCCGTGCTCAGCTACA
GGCATGAAAATGGCGCCACACTAATGCGCAGCTCCCAGCCGCTGTCCATT
CAGGGCATCAAGCGCTGTAGAGCTGACGAGGCTATCCTTAATCTGGTGCT
GGGTCGCAGTCGGAAGGGGTTCATCGTGGACACTTGGGGTAAGGGCAAAT
CGAATACGGAAACTGACCTGCACTACTCGCAGTGGAAGAAGGTAAATCGT
TCAATTGGAAACGTCAGTTCGCCCGCCTCTATTTTGGACAGCTTTGCTCG
GCTTATCGAAGCTTGCAACGATTTGGGATGCAGTACTGATAAATGGCTAT
CGCGACTGGAGAACAGCGGCTGGCTTAGTCTTGTGCTGAACTCACTGAAC
GCCTCCTGTGTGGTGGCCCAATGCCTGGACCAAGAGGGAAGTCCAGTGTT
AGTGCACGGTGCTAAGGGGTTGGACTCCACGCTTATAGTCACCTCACTGG
TGCAGATCATTCTCAATCCGGACTGCCGGACTGTAAGGGGCCTGCAGGCT
TTGATAGAGCGCGAGTGGATCCAGGCGGGACATCCGTTCGCCTCGCGTCA
TCGCTACTCATGCTATACACCAAATCAGACACGCAATAAGACCTCTGGTG
CCACCTTCGTCCTATTTCTGGATTGCATTTATCAGCTTTACACGCAGTTC
CCCTGCAGCTTTGAATTCAGCACTCAACTGCTGATCCTTCTATTTGAGCA
CAGTCACTTTTCGCAGTATGGAACTTTCCTGTGCGATTCAGAGCGGGAGA
GAAACGAACTGAATGTGCACACCAGGACGACGAGCCTGTGGTCTTATTTG
AACCGGCCTGATGTCCTTCAGACATTCTTGAATCCGCTGTACGAGCCTAA
TGCCAATGTGATATGGCCATCGGTGGCGCCCATAAGCTTAGAGCTGTGGA
GTGATCTCTATTTGCGGTGGGTGATAGATCAACGCAGCTCAGTCACAGTC
ATGTCGCAAATTCAGGAACTTGTCACCCGCGAGAAGGAACTCAGGACTCA
GGCCCTCAAGTTGCGCAAACAAGCCATGGAGCTCGGCCAGGAAGTGTCCA
ACCTCATGAAAAGTGGAAACGATACATAGAAGCTTTCTAGACCAT
BS23957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5026-RC | 1863 | CG5026-PC | 1..1863 | 17..1879 | 9315 | 100 | Plus |
| CG5026-RB | 1863 | CG5026-PB | 1..1863 | 17..1879 | 9315 | 100 | Plus |
| CG5026-RA | 1863 | CG5026-PA | 1..1863 | 17..1879 | 9315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5026-RC | 2447 | CG5026-RC | 387..2250 | 16..1879 | 9320 | 100 | Plus |
| CG5026-RB | 2822 | CG5026-RB | 387..2250 | 16..1879 | 9320 | 100 | Plus |
| CG5026-RA | 2472 | CG5026-RA | 387..2250 | 16..1879 | 9320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8969948..8970423 | 815..1290 | 2380 | 100 | Plus |
| 3L | 28110227 | 3L | 8970482..8970895 | 1290..1703 | 2070 | 100 | Plus |
| 3L | 28110227 | 3L | 8969496..8969886 | 425..815 | 1955 | 100 | Plus |
| 3L | 28110227 | 3L | 8969176..8969428 | 175..427 | 1265 | 100 | Plus |
| 3L | 28110227 | 3L | 8968914..8969073 | 16..175 | 800 | 100 | Plus |
| 3L | 28110227 | 3L | 8970948..8971047 | 1703..1802 | 500 | 100 | Plus |
| 3L | 28110227 | 3L | 8971099..8971180 | 1798..1879 | 410 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 2942..3010 | 831..765 | 124 | 66.7 | Minus |
BS23957.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:36 Download gff for
BS23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RC | 386..2248 | 17..1879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:18 Download gff for
BS23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RA | 388..2250 | 17..1879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:39 Download gff for
BS23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RA | 388..2250 | 17..1879 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:39 Download gff for
BS23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8969177..8969427 | 176..426 | 100 | -> | Plus |
| 3L | 8968915..8969073 | 17..175 | 100 | -> | Plus |
| 3L | 8969498..8969885 | 427..814 | 100 | -> | Plus |
| 3L | 8969948..8970423 | 815..1290 | 100 | -> | Plus |
| 3L | 8970483..8970895 | 1291..1703 | 100 | -> | Plus |
| 3L | 8970949..8971046 | 1704..1801 | 100 | -> | Plus |
| 3L | 8971103..8971180 | 1802..1879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:18 Download gff for
BS23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8962015..8962173 | 17..175 | 100 | -> | Plus |
| arm_3L | 8962277..8962527 | 176..426 | 100 | -> | Plus |
| arm_3L | 8962598..8962985 | 427..814 | 100 | -> | Plus |
| arm_3L | 8963048..8963523 | 815..1290 | 100 | -> | Plus |
| arm_3L | 8963583..8963995 | 1291..1703 | 100 | -> | Plus |
| arm_3L | 8964049..8964146 | 1704..1801 | 100 | -> | Plus |
| arm_3L | 8964203..8964280 | 1802..1879 | 100 | | Plus |
BS23957.pep Sequence
Translation from 16 to 1878
> BS23957.pep
MEFADLIKTPKLDGVLLHDPSNAGASGATVGTLCITGHHLLLSARQETSQ
ELWLLHKNIDCVEKKPSLSQNIVVGGIITLKCKDLRIISLEIKCGKEFFN
VAASLEALSAIQNTELLYPFFYRPMYSILEDGYTMFRPELEFAKLISGVG
MGGASSPNVANITICMPSTSTSTLTVGAGIPHPLQNGYAIEALACGVGGV
GGGALQSPQASCEWRITNVNRDFSVCATYGATLIVPKAITDEQIVLSAAF
RDGGRFPVLSYRHENGATLMRSSQPLSIQGIKRCRADEAILNLVLGRSRK
GFIVDTWGKGKSNTETDLHYSQWKKVNRSIGNVSSPASILDSFARLIEAC
NDLGCSTDKWLSRLENSGWLSLVLNSLNASCVVAQCLDQEGSPVLVHGAK
GLDSTLIVTSLVQIILNPDCRTVRGLQALIEREWIQAGHPFASRHRYSCY
TPNQTRNKTSGATFVLFLDCIYQLYTQFPCSFEFSTQLLILLFEHSHFSQ
YGTFLCDSERERNELNVHTRTTSLWSYLNRPDVLQTFLNPLYEPNANVIW
PSVAPISLELWSDLYLRWVIDQRSSVTVMSQIQELVTREKELRTQALKLR
KQAMELGQEVSNLMKSGNDT*
BS23957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5026-PC | 620 | CG5026-PC | 1..620 | 1..620 | 3227 | 100 | Plus |
| CG5026-PB | 620 | CG5026-PB | 1..620 | 1..620 | 3227 | 100 | Plus |
| CG5026-PA | 620 | CG5026-PA | 1..620 | 1..620 | 3227 | 100 | Plus |
| CG3530-PC | 639 | CG3530-PC | 94..448 | 214..568 | 522 | 34.5 | Plus |
| CG3530-PB | 689 | CG3530-PB | 144..498 | 214..568 | 522 | 34.5 | Plus |
