BS23958.complete Sequence
905 bp assembled on 2011-01-28
GenBank Submission: KX801555
> BS23958.complete
GAAGTTATCAGTCGACATGGGCTCCCGTTCACGTACACCCAGTCCGTCGG
GCAAGCGACGCCACCATAAGAGCAAGCACAAAAAACGCAGTAAGTCCCAC
CACGACCACGAGCGGCCCAGCACAAGAACGGATAGAGACAAGTCCTCGGA
GGTGAACAACCATGGACGACATCGCGAACGGGACAGGGACCGCGAGCGGG
ATAGACACCGCAGCGACCGACACACTGAGCGCGACTACCGTCACTCCCCC
TCGATCCTGAAATCCCGAAAACGCTCCAGCTCGTCGAGCAGCGACAGTCA
GTACTCCGAGCAGGAGTCGCAACGTAGCAAACAGAAGCGCAGCCGCTTTA
AGAAGCTGGATGAGCAAAACCAGATGCAGGTCGAACGCCTGGCCGAGATG
GAGCGGCAGCGTCGGGCGAAGGAGCTCGAGCAAAAGACAATCGAAGAGGA
AGCCGCCAAGCGCATAGAGATGCTGGTAAAAAAGCGCGTCGAGGAGGAGC
TAGAAAAGCGTCGCGACGAAATCGAACAGGAGGTCAATCGACGCGTTGAG
ACCGCCAAGGCTGAGATGGAGCGCGAAATGATGCTGGAGCTGGAGCGGCG
GCGAGAGCAGATACGCGAAGAAGAACGCCGGCGCGAGGAGGATGAAAAAC
AAAAACGCGAAGAGCTCGAAGAAATTTTGGCCGAAAACAATCGCAAAATC
GAAGAGGCGCAAAGAAAACTGGCCGAAGAACGGTTAGCAATAATCGAGGA
GCAGCGCCTTATGGACGAGGAGCGGCAACGCATGCGCAAGGAGCAGGAGA
AGCGCGTCAAGGAAGAGCAGAAGGTCATATTAGGCAAAAACAATTCCAGG
CCCAAGCTATCGTTCTCCCTGAAACCGGGCGCATTATGAAAGCTTTCTAG
ACCAT
BS23958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31712-RA | 873 | CG31712-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
CG31712-RB | 855 | CG31712-PB | 1..622 | 17..638 | 3110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31712-RA | 1491 | CG31712-RA | 129..1002 | 16..889 | 4370 | 100 | Plus |
CG31712-RB | 3159 | CG31712-RB | 129..751 | 16..638 | 3115 | 100 | Plus |
CG31712-RB | 3159 | CG31712-RB | 2417..2670 | 636..889 | 1270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9937658..9938006 | 364..16 | 1745 | 100 | Minus |
2L | 23513712 | 2L | 9937237..9937512 | 638..363 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 9935256..9935424 | 889..721 | 845 | 100 | Minus |
2L | 23513712 | 2L | 9935485..9935571 | 722..636 | 435 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 3512..3540 | 679..651 | 109 | 86.2 | Minus |
BS23958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:35 Download gff for
BS23958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31712-RA | 138..1009 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:21 Download gff for
BS23958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31712-RA | 130..1001 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:14 Download gff for
BS23958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31712-RA | 130..1001 | 17..888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:14 Download gff for
BS23958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9937658..9938005 | 17..364 | 100 | | Minus |
2L | 9935257..9935423 | 722..888 | 100 | <- | Minus |
2L | 9935486..9935569 | 638..721 | 100 | <- | Minus |
2L | 9937238..9937510 | 365..637 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:21 Download gff for
BS23958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9935257..9935423 | 722..888 | 100 | <- | Minus |
arm_2L | 9935486..9935569 | 638..721 | 100 | <- | Minus |
arm_2L | 9937238..9937510 | 365..637 | 100 | <- | Minus |
arm_2L | 9937658..9938005 | 17..364 | 100 | | Minus |
BS23958.pep Sequence
Translation from 16 to 888
> BS23958.pep
MGSRSRTPSPSGKRRHHKSKHKKRSKSHHDHERPSTRTDRDKSSEVNNHG
RHRERDRDRERDRHRSDRHTERDYRHSPSILKSRKRSSSSSSDSQYSEQE
SQRSKQKRSRFKKLDEQNQMQVERLAEMERQRRAKELEQKTIEEEAAKRI
EMLVKKRVEEELEKRRDEIEQEVNRRVETAKAEMEREMMLELERRREQIR
EEERRREEDEKQKREELEEILAENNRKIEEAQRKLAEERLAIIEEQRLMD
EERQRMRKEQEKRVKEEQKVILGKNNSRPKLSFSLKPGAL*
BS23958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31712-PA | 290 | CG31712-PA | 1..290 | 1..290 | 1453 | 100 | Plus |
CG31712-PB | 284 | CG31712-PB | 1..207 | 1..207 | 1049 | 100 | Plus |
CG2839-PA | 826 | CG2839-PA | 422..676 | 13..269 | 298 | 29.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 467..730 | 13..269 | 293 | 30 | Plus |
CG2839-PA | 826 | CG2839-PA | 286..534 | 13..269 | 290 | 30.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 294..568 | 13..269 | 290 | 26.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 355..616 | 13..269 | 290 | 28.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 379..640 | 13..269 | 290 | 29.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 407..652 | 13..269 | 284 | 29.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 312..592 | 4..269 | 283 | 27.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 343..598 | 13..269 | 281 | 28 | Plus |
CG2839-PA | 826 | CG2839-PA | 506..749 | 13..267 | 273 | 27.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 267..506 | 39..269 | 258 | 31 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1397..1666 | 13..279 | 239 | 23.4 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1397..1666 | 13..279 | 239 | 23.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 527..791 | 2..269 | 235 | 26.6 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1366..1623 | 18..269 | 225 | 28.1 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1336..1566 | 30..268 | 216 | 25.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 269..458 | 84..280 | 215 | 31 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1323..1568 | 39..286 | 193 | 22.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 266..402 | 131..269 | 192 | 40.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 263..429 | 106..269 | 190 | 35.7 | Plus |