BS23960.complete Sequence
1106 bp assembled on 2011-02-07
GenBank Submission: KX801827
> BS23960.complete
GAAGTTATCAGTCGACATGGATATGCATGAGCTTACAGCTGTTTCCAAAA
TGAAAGGTCCCTATTTTACTTCCCAGTACTTCAGTTCGCAAGAATTTCCA
CGTACTAATGGGGTAACTAGACTGCGCTTCTCTCTCAACATGCTGATACA
TATCAGCATTAGAAATTGGAGTGCTGATGAGTGCCTAATGCTCGGTCTGA
TGTATCTATTCCTAAAAGATTACAACCAATCGGAGAATTGGTTGGAATTG
GCTCTATATCATTACGATGATAATGTCAGTCCAGAAGTTCTTAAAATTAA
ACTTTGGAACTACCCGAACCTGTTGGAATCCCTAGTGGAGGCCAACAAGG
GACTTGGTCACTATTTCGAAGCTAAAAAGTATGCGAATGAGCTGCTCTCA
ATCAATCCCAATCACACTTATATGCTGACACAACTGCCAAAGCTAAAACA
TTTGCAATCGAATCCTGCCAAACTCACAAAACCGAAGAAAGTGTTCCAGC
TGCAGAAAGAAATATGCTCAAAACGCTATAGGAGGAAATCAGGAGTTCTT
GTATGTCGCTATGTGGATTGGACACCATTCCTTAAACTGGCACCCTTAAA
AATGGAGGAGTTGTCCATGAAACCCTATATCAGTATTTTTTACGGATTCC
TTGGTCAAAAGGACATAGAAGTTTTAAAGAATGTATCCAGACCAAAACTT
CAACGAATCGAACATTTATCAGGGAATTGCAGTTGCAAAATCGGAAATCT
TTCTACTTCTTTACATGATGTTGTACGCAAAGTAAATGAATTAATTCTTG
GTATTACTGGATTTCCATTGAAGGGAAATCAAATGCTAGAAGTTATAAAT
TATGGTATTGCTGGGAACTACAATCCCGAAGAGCCCAAGATCCACAACAA
AGCAAATGCTTTCATCTTTTTGAGCAATGCTGGAAAGGGCGGAGAAATAG
TTTTTCCTTCTCGCCATTTAAAAGTCAGACCTCGAAAGGGTTCAATGTTA
GTTTGGGAAAATCTCAAAAAAAGTCTTATTTATCATCAGTGTCCAATTCT
AAAGGGAAATATGTGGGTGGCTAACAAAGTGTTAAACTGAAAGCTTTCTA
GACCAT
BS23960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4174-RF | 1422 | CG4174-PF | 489..1422 | 157..1090 | 4670 | 100 | Plus |
| CG4174-RE | 1422 | CG4174-PE | 489..1422 | 157..1090 | 4670 | 100 | Plus |
| CG4174-RD | 1422 | CG4174-PD | 489..1422 | 157..1090 | 4670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13380-RD | 3428 | CG13380-RD | 2299..3232 | 157..1090 | 4670 | 100 | Plus |
| CG13380-RB | 3231 | CG13380-RB | 2102..3035 | 157..1090 | 4670 | 100 | Plus |
| CG4174-RF | 3423 | CG4174-RF | 2294..3227 | 157..1090 | 4670 | 100 | Plus |
| CG13380-RD | 3428 | CG13380-RD | 1472..1612 | 16..156 | 705 | 100 | Plus |
| CG13380-RB | 3231 | CG13380-RB | 1472..1612 | 16..156 | 705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18600639..18601202 | 919..356 | 2820 | 100 | Minus |
| 3L | 28110227 | 3L | 18601262..18601466 | 358..154 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 18600429..18600576 | 1067..920 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 18615741..18615845 | 156..52 | 525 | 100 | Minus |
| 3L | 28110227 | 3L | 18616000..18616036 | 52..16 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:24:06 has no hits.
BS23960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 15:00:23 Download gff for
BS23960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4174-RB | 1461..2533 | 17..1089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:48 Download gff for
BS23960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13380-RB | 1473..2545 | 17..1089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:52 Download gff for
BS23960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4174-RF | 1473..1614 | 17..157 | 99 | <- | Plus |
| CG4174-RF | 2295..3226 | 158..1089 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:52 Download gff for
BS23960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18600347..18600368 | 1068..1089 | 100 | <- | Minus |
| 3L | 18600429..18600576 | 920..1067 | 100 | <- | Minus |
| 3L | 18600639..18601201 | 357..919 | 100 | <- | Minus |
| 3L | 18601264..18601463 | 157..356 | 100 | <- | Minus |
| 3L | 18615741..18615844 | 53..156 | 100 | <- | Minus |
| 3L | 18616000..18616035 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:48 Download gff for
BS23960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18608841..18608944 | 53..156 | 100 | <- | Minus |
| arm_3L | 18609100..18609135 | 17..52 | 100 | | Minus |
| arm_3L | 18593447..18593468 | 1068..1089 | 100 | <- | Minus |
| arm_3L | 18593529..18593676 | 920..1067 | 100 | <- | Minus |
| arm_3L | 18593739..18594301 | 357..919 | 100 | <- | Minus |
| arm_3L | 18594364..18594563 | 157..356 | 100 | <- | Minus |
BS23960.pep Sequence
Translation from 16 to 1089
> BS23960.pep
MDMHELTAVSKMKGPYFTSQYFSSQEFPRTNGVTRLRFSLNMLIHISIRN
WSADECLMLGLMYLFLKDYNQSENWLELALYHYDDNVSPEVLKIKLWNYP
NLLESLVEANKGLGHYFEAKKYANELLSINPNHTYMLTQLPKLKHLQSNP
AKLTKPKKVFQLQKEICSKRYRRKSGVLVCRYVDWTPFLKLAPLKMEELS
MKPYISIFYGFLGQKDIEVLKNVSRPKLQRIEHLSGNCSCKIGNLSTSLH
DVVRKVNELILGITGFPLKGNQMLEVINYGIAGNYNPEEPKIHNKANAFI
FLSNAGKGGEIVFPSRHLKVRPRKGSMLVWENLKKSLIYHQCPILKGNMW
VANKVLN*
BS23960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4174-PF | 473 | CG4174-PF | 163..473 | 47..357 | 1650 | 99.7 | Plus |
| CG4174-PE | 473 | CG4174-PE | 163..473 | 47..357 | 1650 | 99.7 | Plus |
| CG4174-PD | 473 | CG4174-PD | 163..473 | 47..357 | 1650 | 99.7 | Plus |
| CG15539-PC | 508 | CG15539-PC | 169..494 | 55..357 | 291 | 28.2 | Plus |
| CG15539-PA | 386 | CG15539-PA | 46..372 | 55..357 | 283 | 28.4 | Plus |
