BS23961.complete Sequence
2195 bp assembled on 2011-02-18
GenBank Submission: KX800964
> BS23961.complete
GAAGTTATCAGTCGACATGACAGACCTGCTAAAGATAGCCGATGCAATCG
TCCTGGAGTACTTGCAGTCCAAGGACAAGAACCTAGCCAAGGTTTTCCAG
CAGAAGACGAAGGCGGCCAGTGTCGCCAAAAGCAGCCCAAAGTTGAGTGA
AATCCTTCAGTTCTACCAGACCAAAAGCCCCAAAAAGATCCCAGCAATCA
AGGCGACAGCCGGAGACTCCAGCGAAGACAGCGACTCAGACTCTGAGTCT
GATGCGGCGCCTAAGAAGCCAGCGACAGCTCCTGCACTAACAAACGGCAA
GGCTGTCAAAAAGGCAGCTTCTTCAACCAGCGAGGACAGCGATTCAGAGG
AGGAGAAGAAGCCAGCAGCAAAGGCCACGCCGGCCAAGGCTGTCGGCAAG
AAGGCAAAATCCTCCAGCGAGGACAGTTCCTCGGAGGAAGAAGCACCCAA
AAAAGCTGCTCCAGTGAAGGCACCTCCGGCCAAGGCGGCTCCCGCGAAGA
AGGTTGAGTCCAGCAGCGAGGATAGCAGTTCCGAGGAAGAACCGGCAAAG
CCCGCCGTCAAGGCCACAACGACTAAGGTTGCTCCCGCCAAGAAGGCCGA
CTCCAGCAGCGAAGAAAGCAGCTCCGATGAGGAGACTAAGCCAGCTGCCA
AGCCTGTAGCCAAGGCTGCACCGGCAAAGAAAGCAGCATCCTCCAGCGAG
GAAAGCGACTCCGATGACGAGCCAGCCGCCAAGAAGCCTGCCGTCCAGCC
TGCCGCAAAGCCAGCTCCTAAGGCAGCCGCTTCTAGTTCCGAAGACAGCA
GCTCAGAGGAGGAGGTCAAACCCGCTGCTAAATCTGCTGCCAAGTTGGCT
CCTGCTAAGAAGGGGGCTTCCTCTAGTGATGATAGTTCCTCTGAAGACGA
GGCACCCAAAAAGGCAGCAACTCTCGCAAAGCCCATTTCTAAGGCTGCTC
CCACCAAAAAGGCCGACAGTTCCACTGAGGATAGTTCTTCGGAAGACGAT
GCTCCTAAGAAGGTAGCTCCAGCAAAGGCTACGCCAGCTAAGGCAATTCC
TGCCAAGAAGGCAGCTTCCAGCGATGACAGCTCCTCGGAGGAAGAGGCGC
CCAAGAAGGCAGCTCCAGCAAATGCCACGCCAGCTAGGGCACCTCCTGCC
AAGAAGGCAGCTTCCAGCGATGACAGCTCCTCGGAAGAAGAGGCGCCCAA
GAAGGCAGCTCCAGCAAAGGCCACGCCAGCTAAGGCAACTCCTGCCAAGA
AGGCAGCTTCCAGCGATGACAGCTCCTCGGAAGAAGAGGCGCCCAAGAAG
GCTGCCGCCCCAGCAAAGGCGACACCGGCCAAAAAGGCCAAGTCTTCAAG
CGAAGACAGCGACTCCGATGAGGAGGAAGCTCCCAAGAAACCAGCCGCGA
AGGCCGTTGCAAAGGCTGCTTCTTCGGAAGATAGCGATAGCTCAGAAGAC
GAAAAGCCAGCAAAGGCTGCTCCCAAGGCTCTGGCCAAGTCTGCAAAGGC
TGCCTCCTCAGACAGTGACGATTCCAGCGATGAAGAAACGCCGGCAGTGA
AGCCAGCTGTCAAGAAGACTGCTGCTCCTGCGAAGAAGGCTGACAGCAGC
AGCGACGAGAGTGACTCTGGTGAAGAGTCCGGCGAGGTCAAGCCCAACTC
AGCTACCAATGGCAATGAGAAGACCGCTCAGAAGCGCAAGTTTAGTGGTG
GCGACCAGGACGAGGCCACTCCCAACAAGAAGTACAACAACTTCGTCAAA
TCGGGAGAGCAACAGGAAAACGACTTTAAGAAGCACAACAACGGACGGGG
CGGCCGAGGAGGCTCAGGCTTCTCCGGACGACCGGATCGCAGCACTTGGG
AGACCAACAAGTTCAACGGCGAGGGCGGCGGTGATGGAGGCGGCTTCAAG
AAGATTGGCGATCGCAAGAGCTTTGGAGGCTTTGATAACAACCAGCGCGG
AGGACGTGGTGGTGGCGGTCGTGGAGGCGGCGGAGGCTTCGGTGGTCGTG
GCGGTGGCGGCCGTGGCGGCGGTGGTGGCTTCGGAGGACGTGGTGGCGGC
GGACGCGGAGGCGGCGGCTTTGGAGGACGCGGGGGCCGCGGTGGAGGCGG
ACGTGGAGGCGGATTCGGCAACAAATCCTTCGACTCGTCGGCGCCAAAGC
AAAACAAGAAGATCACCTTCGACAATTAGAAGCTTTCTAGACCAT
BS23961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nopp140-RA | 2163 | CG7421-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
| Nopp140-RE | 2322 | CG7421-PE | 1..1760 | 17..1776 | 8755 | 99.8 | Plus |
| Nopp140-RB | 2061 | CG7421-PB | 1..1760 | 17..1776 | 8755 | 99.8 | Plus |
| Nopp140-RE | 2322 | CG7421-PE | 1907..2322 | 1764..2179 | 2080 | 100 | Plus |
| Nopp140-RA | 2163 | CG7421-PA | 954..1190 | 1066..1302 | 870 | 91.1 | Plus |
| Nopp140-RA | 2163 | CG7421-PA | 1050..1286 | 970..1206 | 870 | 91.1 | Plus |
| Nopp140-RE | 2322 | CG7421-PE | 954..1190 | 1066..1302 | 870 | 91.1 | Plus |
| Nopp140-RE | 2322 | CG7421-PE | 1050..1286 | 970..1206 | 870 | 91.1 | Plus |
| Nopp140-RA | 2163 | CG7421-PA | 954..1094 | 1162..1302 | 495 | 90.1 | Plus |
| Nopp140-RA | 2163 | CG7421-PA | 1146..1286 | 970..1110 | 495 | 90.1 | Plus |
| Nopp140-RE | 2322 | CG7421-PE | 954..1094 | 1162..1302 | 495 | 90.1 | Plus |
| Nopp140-RE | 2322 | CG7421-PE | 1146..1286 | 970..1110 | 495 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nopp140-RA | 3073 | CG7421-RA | 105..2270 | 16..2181 | 10830 | 100 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 105..1865 | 16..1776 | 8760 | 99.8 | Plus |
| Nopp140-RB | 2716 | CG7421-RB | 105..1865 | 16..1776 | 8760 | 99.8 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 2012..2429 | 1764..2181 | 2090 | 100 | Plus |
| Nopp140-RA | 3073 | CG7421-RA | 1059..1295 | 1066..1302 | 870 | 91.1 | Plus |
| Nopp140-RA | 3073 | CG7421-RA | 1155..1391 | 970..1206 | 870 | 91.1 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 1059..1295 | 1066..1302 | 870 | 91.1 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 1155..1391 | 970..1206 | 870 | 91.1 | Plus |
| Nopp140-RA | 3073 | CG7421-RA | 1059..1199 | 1162..1302 | 495 | 90.1 | Plus |
| Nopp140-RA | 3073 | CG7421-RA | 1251..1391 | 970..1110 | 495 | 90.1 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 1059..1199 | 1162..1302 | 495 | 90.1 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 1251..1391 | 970..1110 | 495 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21833179..21834830 | 115..1766 | 8260 | 100 | Plus |
| 3L | 28110227 | 3L | 21835464..21835882 | 1763..2181 | 2095 | 100 | Plus |
| 3L | 28110227 | 3L | 21834034..21834270 | 1066..1302 | 870 | 91.1 | Plus |
| 3L | 28110227 | 3L | 21834130..21834366 | 970..1206 | 870 | 91.1 | Plus |
| 3L | 28110227 | 3L | 21832878..21832978 | 16..116 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21834034..21834174 | 1162..1302 | 495 | 90.1 | Plus |
| 3L | 28110227 | 3L | 21834226..21834366 | 970..1110 | 495 | 90.1 | Plus |
Blast to na_te.dros performed 2014-11-26 16:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 406..537 | 1057..1190 | 143 | 61.6 | Plus |
BS23961.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:37 Download gff for
BS23961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nopp140-RA | 135..2297 | 17..2179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:20 Download gff for
BS23961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nopp140-RA | 106..2268 | 17..2179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:40 Download gff for
BS23961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nopp140-RA | 106..2268 | 17..2179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:40 Download gff for
BS23961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21832879..21832977 | 17..115 | 100 | -> | Plus |
| 3L | 21833180..21834829 | 116..1765 | 100 | -> | Plus |
| 3L | 21835467..21835880 | 1766..2179 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:20 Download gff for
BS23961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21825979..21826077 | 17..115 | 100 | -> | Plus |
| arm_3L | 21826280..21827929 | 116..1765 | 100 | -> | Plus |
| arm_3L | 21828567..21828980 | 1766..2179 | 100 | | Plus |
BS23961.pep Sequence
Translation from 16 to 2178
> BS23961.pep
MTDLLKIADAIVLEYLQSKDKNLAKVFQQKTKAASVAKSSPKLSEILQFY
QTKSPKKIPAIKATAGDSSEDSDSDSESDAAPKKPATAPALTNGKAVKKA
ASSTSEDSDSEEEKKPAAKATPAKAVGKKAKSSSEDSSSEEEAPKKAAPV
KAPPAKAAPAKKVESSSEDSSSEEEPAKPAVKATTTKVAPAKKADSSSEE
SSSDEETKPAAKPVAKAAPAKKAASSSEESDSDDEPAAKKPAVQPAAKPA
PKAAASSSEDSSSEEEVKPAAKSAAKLAPAKKGASSSDDSSSEDEAPKKA
ATLAKPISKAAPTKKADSSTEDSSSEDDAPKKVAPAKATPAKAIPAKKAA
SSDDSSSEEEAPKKAAPANATPARAPPAKKAASSDDSSSEEEAPKKAAPA
KATPAKATPAKKAASSDDSSSEEEAPKKAAAPAKATPAKKAKSSSEDSDS
DEEEAPKKPAAKAVAKAASSEDSDSSEDEKPAKAAPKALAKSAKAASSDS
DDSSDEETPAVKPAVKKTAAPAKKADSSSDESDSGEESGEVKPNSATNGN
EKTAQKRKFSGGDQDEATPNKKYNNFVKSGEQQENDFKKHNNGRGGRGGS
GFSGRPDRSTWETNKFNGEGGGDGGGFKKIGDRKSFGGFDNNQRGGRGGG
GRGGGGGFGGRGGGGRGGGGGFGGRGGGGRGGGGFGGRGGRGGGGRGGGF
GNKSFDSSAPKQNKKITFDN*
BS23961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nopp140-PA | 720 | CG7421-PA | 1..720 | 1..720 | 3612 | 100 | Plus |
| Nopp140-PE | 773 | CG7421-PE | 1..773 | 1..720 | 3548 | 93.1 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 1..609 | 1..601 | 2863 | 97.2 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 1..608 | 1..601 | 2854 | 97 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 592..1177 | 62..604 | 372 | 21.7 | Plus |
