BS23963.complete Sequence
533 bp assembled on 2011-01-28
GenBank Submission: KX803300
> BS23963.complete
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGGGGGCAA
TATTTTACTACTAATCGCACATCCAGAACGTATACGCACTGAGGTCCGCT
GCGCCCGCTGCAACGCCCACATGGGTCACGTCTTCGAGGATGGTCCGAAG
CCGACCCGCAAGCGCTACTGCATCAATTCCGCCTCCATTGAGTTCGTGAA
CGCGGATCCCGCCACCTCGTCCCCGCCCGTGGCCACGCCCACCGCGGCGC
CCATTGCCCAGCAGTGAAAGCTTTCTAGACCAT
BS23963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RE | 627 | CG6584-PE | 127..627 | 17..517 | 2505 | 100 | Plus |
| SelR-RB | 501 | CG6584-PB | 1..501 | 17..517 | 2505 | 100 | Plus |
| SelR-RJ | 579 | CG6584-PJ | 127..404 | 17..294 | 1390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RE | 1156 | CG6584-RE | 376..876 | 17..517 | 2505 | 100 | Plus |
| SelR-RB | 1041 | CG6584-RB | 261..761 | 17..517 | 2505 | 100 | Plus |
| SelR-RJ | 2392 | CG6584-RJ | 376..653 | 17..294 | 1390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10863635..10863860 | 517..292 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 10866528..10866698 | 294..124 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:07:27 has no hits.
BS23963.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:37 Download gff for
BS23963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RE | 371..870 | 17..516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:52 Download gff for
BS23963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RB | 261..760 | 17..516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:43 Download gff for
BS23963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RB | 261..760 | 17..516 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:43 Download gff for
BS23963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10863636..10863858 | 294..516 | 100 | <- | Minus |
| 3R | 10866529..10866693 | 129..293 | 100 | <- | Minus |
| 3R | 10866809..10866920 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:52 Download gff for
BS23963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6689358..6689580 | 294..516 | 100 | <- | Minus |
| arm_3R | 6692251..6692415 | 129..293 | 100 | <- | Minus |
| arm_3R | 6692531..6692642 | 17..128 | 100 | | Minus |
BS23963.pep Sequence
Translation from 16 to 516
> BS23963.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGGNILLLI
AHPERIRTEVRCARCNAHMGHVFEDGPKPTRKRYCINSASIEFVNADPAT
SSPPVATPTAAPIAQQ*
BS23963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-PB | 166 | CG6584-PB | 1..166 | 1..166 | 899 | 100 | Plus |
| SelR-PE | 208 | CG6584-PE | 43..208 | 1..166 | 899 | 100 | Plus |
| SelR-PI | 155 | CG6584-PI | 1..155 | 1..166 | 820 | 93.4 | Plus |
| SelR-PA | 155 | CG6584-PA | 1..155 | 1..166 | 820 | 93.4 | Plus |
| SelR-PC | 197 | CG6584-PC | 43..197 | 1..166 | 820 | 93.4 | Plus |
