BS23964.complete Sequence
2006 bp assembled on 2011-02-18
GenBank Submission: KX804812
> BS23964.complete
GAAGTTATCAGTCGACATGTCTGGCCTCAAGAAATTCCAAAACACTGAGG
AATGGCGTCAGAAACTCCGTCAGTTTCTAATGACCGAGCGCTTGCCGAAA
AAGCCCGTGAAAATGGACGAAACGAAGGATATGCGCTATAGTTTGGAGAT
CGACGAGGATTTGAGGAGACCCTTGGAGGCGCGGGCCAAGAAAGTTCTGG
CCGTTAATTCTGCCAGTCAAAGGACTGTTAATCTCGGCGAGGATACTATG
TACGAGGCAGGTGACTTGGAGCACTTGGACGATGGCGATGATAGCTTCAG
TGCCTTTGAGCGCATGTGCGACAAAACCGGTTCCGATCCGGATAGCACTC
TTTTCCAGTACCTGCACAGCGAGGACCGGAGTCAGGTGATGGCCAGGGCT
AGGGATCATAGCACCGACGATCAGAAAGAGATCGATGCACTGCGTCGCAT
GCTAGAGGCAGTGGGTACAGAAGACGATCTATTGGAGAACGAAAGTCCCG
TCAAGGGGGCGGAGTGCACTCACCTGGAGGACATTGAGGCGCCGTCGCGC
TTTTGGGACAACACCCTGGCCGGAATGGACGAGACCTCATCCGACTCTGG
GCTGACTCCTAAAGCATTGACCAAGGTTTCGCCTGTCAAAATGGTGGGGC
TGCTTCGCCCCTCAACCATCATCGAAGACAGCGAACTGGAGTCGTCTGAT
GTGTCTTCACACACAAGCTTCCAAAGCGCTCGCACCCTAAAGACAAATGC
ATCTAGTTCTTACGAAACAGCCACGGATACTTCCCTCAGTGGAACGCTCC
TAAACGTCGACGAATTGTTTTACGCCGCAATTGCCAAGGCCAAGCCACCA
GGAATGTCCAAGGGAGAGGAGCTGGAGCTCTTAAGCGATCTTCATGGCAG
TCTTAGAGAGCTGGCCTCACTTCCGAAGGATGAGGTCGAGGAGGAAGAGG
ACGATATAGAGGATACAATAATCGAGCTATCCTCTTCTGACGATGAAGAA
GTGCAGCTAGTTCCAGAAGTAAAACAAGAAGACACGTCCCGTGTGTCCTC
AGTCCACGGAAAAGATCACACTGAGCAGAAACCAGCGGAGAAGAGCGTTG
AAAATAAGGAAAATTCGTTGCATTTCAATGATACCATGGAAGAAATGGAG
TACATGATGCAAAAGGGTATGGAGTACATGGCAGGTGGGGCTCCTTCAGT
CGCCGCAGTCAAGGCAGATTGCCCTGTGCTGCCCAAGACCAAACAAAGCA
CGTTCGTTGTTTCACCGAAGCCGGAACCAAAATCACCGGCTGTAGCCTTT
TTGCAGCCATCAATTCCGCTGCGGTCATCTAATCAGCCACAAACAGTTGT
AGGTTCATCTAGCACGGGTAGAAAGCCGCTCAATGTCGGCCTCACCATGG
AGTGGACCAAAAAGAAATTTTTCAGTGCAGCCTCTGGTATTCCTCAGCGT
CGCCAAAATCAGATAAAGCAGCCATACGCCAACATAGTCAGTCCCATACG
CACCTACACCCAGAAGTCTGGTACTGCTCCGCTAATGAGTACATTCCGTC
CAACGAGTTCTGATATGCTATCTACACTGGCCATCAGTGAGTTGGAGCAG
GAGTCTCGCTTGTGTCATCCTAAAGCACTTTTCGCAACAAAGGACGAAAC
ACCCAAGTCCAGTGAAGCGGAATCTTTAATTATCAATGGAATCGATTCAG
CCGCTGATCTGCTTCCCAAAAAGGCTTACATATCTTCCGAAATCAAGCAT
GTGGTTGATGAACGAACTCCTTTGCCCATGCCGAAGGTACCTCAAATTCA
AAAATACCTCAACTCCGCCGTGGAGCCTACTGTTATGCGCCACGATGGCA
AAATGAAAATGCCCGGCGAGGCAGTCCGCAATCCGTCGTCTTCGCATATC
CCACGACGCGCCAATCACAGCCTGGCTGATCTGTCGCTCGCCTCAGGCGA
CGTGTCCTTATACACAATAAGAGATGCCCAAAAGTTTTAAAAGCTTTCTA
GACCAT
BS23964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-RB | 1974 | CG9188-PB | 1..1974 | 17..1990 | 9870 | 100 | Plus |
| sip2-RC | 1923 | CG9188-PC | 24..1923 | 91..1990 | 9500 | 100 | Plus |
| sip2-RE | 1878 | CG9188-PE | 1..1878 | 113..1990 | 9390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-RB | 2223 | CG9188-RB | 175..2148 | 17..1990 | 9870 | 100 | Plus |
| sip2-RE | 2040 | CG9188-RE | 65..1965 | 90..1990 | 9505 | 100 | Plus |
| sip2-RA | 2111 | CG9188-RA | 136..2036 | 90..1990 | 9505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6961893..6963555 | 1752..90 | 8315 | 100 | Minus |
| 2L | 23513712 | 2L | 6961591..6961830 | 1990..1751 | 1200 | 100 | Minus |
| 2L | 23513712 | 2L | 6963744..6963817 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:35:01 has no hits.
BS23964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:56 Download gff for
BS23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 174..2145 | 17..1988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:27 Download gff for
BS23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 175..2146 | 17..1988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:42 Download gff for
BS23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 175..2146 | 17..1988 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:42 Download gff for
BS23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6961593..6961830 | 1751..1988 | 100 | <- | Minus |
| 2L | 6961895..6963554 | 91..1750 | 100 | <- | Minus |
| 2L | 6963744..6963817 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:27 Download gff for
BS23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6961593..6961830 | 1751..1988 | 100 | <- | Minus |
| arm_2L | 6961895..6963554 | 91..1750 | 100 | <- | Minus |
| arm_2L | 6963744..6963817 | 17..90 | 100 | | Minus |
BS23964.pep Sequence
Translation from 16 to 1989
> BS23964.pep
MSGLKKFQNTEEWRQKLRQFLMTERLPKKPVKMDETKDMRYSLEIDEDLR
RPLEARAKKVLAVNSASQRTVNLGEDTMYEAGDLEHLDDGDDSFSAFERM
CDKTGSDPDSTLFQYLHSEDRSQVMARARDHSTDDQKEIDALRRMLEAVG
TEDDLLENESPVKGAECTHLEDIEAPSRFWDNTLAGMDETSSDSGLTPKA
LTKVSPVKMVGLLRPSTIIEDSELESSDVSSHTSFQSARTLKTNASSSYE
TATDTSLSGTLLNVDELFYAAIAKAKPPGMSKGEELELLSDLHGSLRELA
SLPKDEVEEEEDDIEDTIIELSSSDDEEVQLVPEVKQEDTSRVSSVHGKD
HTEQKPAEKSVENKENSLHFNDTMEEMEYMMQKGMEYMAGGAPSVAAVKA
DCPVLPKTKQSTFVVSPKPEPKSPAVAFLQPSIPLRSSNQPQTVVGSSST
GRKPLNVGLTMEWTKKKFFSAASGIPQRRQNQIKQPYANIVSPIRTYTQK
SGTAPLMSTFRPTSSDMLSTLAISELEQESRLCHPKALFATKDETPKSSE
AESLIINGIDSAADLLPKKAYISSEIKHVVDERTPLPMPKVPQIQKYLNS
AVEPTVMRHDGKMKMPGEAVRNPSSSHIPRRANHSLADLSLASGDVSLYT
IRDAQKF*
BS23964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-PB | 657 | CG9188-PB | 1..657 | 1..657 | 3335 | 100 | Plus |
| sip2-PC | 640 | CG9188-PC | 4..640 | 21..657 | 3210 | 99.4 | Plus |
| sip2-PE | 625 | CG9188-PE | 1..625 | 33..657 | 3167 | 100 | Plus |
| sip2-PD | 625 | CG9188-PD | 1..625 | 33..657 | 3167 | 100 | Plus |
| sip2-PA | 625 | CG9188-PA | 1..625 | 33..657 | 3167 | 100 | Plus |
