BS23968.complete Sequence
1292 bp assembled on 2011-02-03
GenBank Submission: KX802410
> BS23968.complete
GAAGTTATCAGTCGACATGAATTTTGTTCTTAGTGTGTTGTTAATAGCAA
TTCTTAAAGATAAGTATGATTACTGGCTGCCATCGAGGACAGGTTGTCAA
ACCCTGGCAGCAAATATATGGTCTGACAAGACGACTGCGCAAAATGAGCC
GATAAATTTGACTAATGCAAATGCACCGATAAAGAATGCAAAGAATCTGA
ATTCTACGATTACAAATGTAGCTGCGTTTGACACCAAATTGAATCACCTA
TTAGTGGACACCATTACTGGACGAGTCTTCGTTGGTGGTGTTAACAGGTT
GTATCAGTTGTCGCCTGATTTGGAGCTTTCCGAAACTGTGAAAACGGGGC
CTCAAAATGATTCCGTCGAGTGTAGCATTCTTGATTGTCCATTAAATGCA
GTTCGCAGTCCGACGGACAATTATAATAAGGTCTTGCTCATTGATCGTGC
AACTTCAAGACTTATTGCGTGTGGATCACTATTTCAAGGTACATGCACAG
TTCGTAATCTTCAAAATGTCAGCATAATTGAGCATGAAGTTCCTGATGCT
GTTGTGGCTAATGATGCCAACTCCTCAACCGTAGCTTTTATTGCGCCGGG
ACCTCCACAACATCCGGTGACTAATGTGATGTACGTCGGAGTTACATACA
CAAATAATTCACCGTACCGCAGTGAAATTCCCGCAGTTGCATCCCGCTCC
CTCGAAAAGACTAAAATGTTTCAGATTGCTTCCTCGGCAGTTACAACTGG
AACGAGAACTTTTATAAACTCATACGCACGTGAAACATATTTTGTCAACT
ATGTTTATGGATTCAGTTCTGAGCGATTTTCTTACTTTCTAACAACACAG
TTAAAGCACAGTCACCATTCTTCTCCTAAAGAGTACATAACGAAACTCGT
ACGAATATGTCAGGAAGACTCGAACTATTATTCTTACACTGAAATTCCAG
TGGAATGTATAAGTGATGCTCAAGGCGGCACTAAATTCAACTTGGTTCAG
GCTGGATTCTTGGGAAAACCTAGCTCAGACCTGGCTCAAAGCTTAGGTAT
ATCTATTCAAGATGATGTCCTCTTTGCTGTTTTTTCAAAAGGAGAAGGGA
ATACACCAACGAACAATTCTGCACTCTGCATTTACTCATTAAAATCTATT
CGTCGAAAGTTTATGCAAAACATAAAATCCTGTTTTAACGGAAGTGGCAT
GAGGGGCCTGGACTTTATATCACCCAGCATGCCATGTGTTCTAACGAGTG
GAGAACAGGCGCTACTGGGCGAGTAAAAGCTTTCTAGACCAT
BS23968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PlexA-RF | 5787 | CG11081-PF | 1..1231 | 17..1247 | 6140 | 99.9 | Plus |
| PlexA-RA | 5838 | CG11081-PA | 1..1231 | 17..1247 | 6140 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PlexA-RF | 10243 | CG11081-RF | 542..1772 | 17..1247 | 6140 | 99.9 | Plus |
| PlexA-RA | 6592 | CG11081-RA | 349..1579 | 17..1247 | 6140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1022242..1023471 | 1246..17 | 6135 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:04:27 has no hits.
BS23968.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:31 Download gff for
BS23968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plexA-RE | 291..1548 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:10 Download gff for
BS23968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plexA-RA | 349..1581 | 17..1248 | 99 | -- | Plus |
| plexA-RA | 5161..5186 | 1249..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:53 Download gff for
BS23968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PlexA-RA | 349..1581 | 17..1248 | 99 | -- | Plus |
| PlexA-RA | 5161..5186 | 1249..1274 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:53 Download gff for
BS23968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1015593..1015620 | 1247..1274 | 100 | <- | Minus |
| 4 | 1022242..1023471 | 17..1246 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:10 Download gff for
BS23968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1036219..1036246 | 1247..1274 | 100 | <- | Minus |
| arm_4 | 1042868..1044097 | 17..1246 | 99 | | Minus |
BS23968.pep Sequence
Translation from 16 to 1275
> BS23968.pep
MNFVLSVLLIAILKDKYDYWLPSRTGCQTLAANIWSDKTTAQNEPINLTN
ANAPIKNAKNLNSTITNVAAFDTKLNHLLVDTITGRVFVGGVNRLYQLSP
DLELSETVKTGPQNDSVECSILDCPLNAVRSPTDNYNKVLLIDRATSRLI
ACGSLFQGTCTVRNLQNVSIIEHEVPDAVVANDANSSTVAFIAPGPPQHP
VTNVMYVGVTYTNNSPYRSEIPAVASRSLEKTKMFQIASSAVTTGTRTFI
NSYARETYFVNYVYGFSSERFSYFLTTQLKHSHHSSPKEYITKLVRICQE
DSNYYSYTEIPVECISDAQGGTKFNLVQAGFLGKPSSDLAQSLGISIQDD
VLFAVFSKGEGNTPTNNSALCIYSLKSIRRKFMQNIKSCFNGSGMRGLDF
ISPSMPCVLTSGEQALLGE*
BS23968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PlexA-PF | 1928 | CG11081-PF | 1..410 | 1..410 | 2122 | 100 | Plus |
| PlexA-PA | 1945 | CG11081-PA | 1..410 | 1..410 | 2122 | 100 | Plus |
| PlexB-PB | 2051 | CG17245-PB | 14..412 | 4..402 | 539 | 33.4 | Plus |
| PlexB-PA | 2051 | CG17245-PA | 14..412 | 4..402 | 539 | 33.4 | Plus |
