BS23971.complete Sequence
2054 bp assembled on 2011-02-18
GenBank Submission: KX804963
> BS23971.complete
GAAGTTATCAGTCGACATGAGCATGGTGCGGCGGATTATCCTGCTGGGCC
CCAAATACAGTGTGTGGGCAAAGGGAAGCGGAGCTGGTCAAACACATGGC
TCGGCAAGATGCGTTATCCTAAGCGCAGGTTCTGCGGAGAACAGCGACTG
TGGCGTACGACGCTTTCACCTGGCAACGCGGAACTGCGCGAGGAATCGAC
TGATGAGACTGGAGCCCGCGATGGCAATACCGGCGTATATTGATGTAACT
AACGCACACTCAAGAACGCCAGAGGACTCCAGCGAGAGTGGGAGCGGCAG
CGAAGGGGGAGCCAGTGCGTCGGGAGGTAGTGGAGCGAAGAGCCCCGGCG
GTGCGGCTGGGTCTGGAGCAAGTTCGACCAGTGGTGCCGATCCGCCAGGC
GGTGGCAGTGACAAGTTCCTCTCGTGCCCAAAGTGCGGCAGCGCCTGCAC
CCAGGTTGAGACCTTTGTCAGCTCGACGCGGTTCGTTAAGTGCGCCAAGT
GCAACTACTTCTTCGTGGTGCTCTCGGAGGTGGAGACTAAGCAGCGCACC
AAGGACGAGCCCAAAAACCAGCGCAAGCCGCCACCTCCGCCACAGAAAAT
CATGGAGTATCTGGACAAACACGTGGTGGGCCAAGATTTTGCCAAAAAGG
TGCTGGCGGTGGCCGTCTACAATCATTATAAGCGCATCCATCACAATCTG
CCGCAACTGCAAAACCAGGGAGCGGGTGCCAGCAATGGAGCCGGTGGCGG
CCTAGATGGTATTCCTCGGCCCGATCTTCTACACATCACCGGTATTGGTC
ACACGCTGAACAGCTCCCCGGGCAACGAACTGCCACCAAAGTCGCCGACT
CAAATGGGCATGGGCGGAGGAATGGGAGGACCTGGACTTGGAGCAGGACT
AACCGGCGCATCATCTAGCAATGCGCGTGGAGGTGGCGACAACCGGTCCG
GATCAGAAATACTTGACCGCCAGTCCACCGATGTCAAACTGGAGAAGAGT
AACATTATCATGTTGGGCCCCACGGGATCCGGTAAGACGCTGATCGCCCA
GACGATCGCCAAGTGCCTGGATGTGCCCTTCGCCATTTGCGACTGCACCA
CGTTAACACAGGCGGGCTATGTGGGCGAGGACATCGAAAGCGTAATTTCA
AAGCTTCTGCAAGATGCCAACTACAATGTAGAGCGCGCACAGACGGGCAT
TGTTTTCCTCGACGAGGTGGACAAAATCGGTGCCGTCCCCGGAATCCATC
AGCTTCGTGACGTTGGCGGCGAGGGCGTCCAGCAAGGCATGCTGAAAATG
CTCGAAGGCACAGTGGTCAACGTGCCGGAGCGTAACTCCCCGCGAAAGCT
GCGTGGCGAAACGGTCCAGGTGGACACCACAAATATCCTTTTCGTGGCCT
CTGGTGCCTACACAGGACTGGACAGGCTTATCGCACGTCGTCTCAACGAA
AAGTATTTGGGTTTCGGCATGCCATCGACCAGCGGATCTGGCCGTCGTGC
AGCTCAATCAGCCGCCAGTCCCATGGACAACGACCAGGAAGAGCGTGATA
AATGCCTGACCAAAGTGCAGGCCCGTGATCTCGTTGAGTTCGGCATGATA
CCGGAATTCGTTGGACGTTTCCCGGTTATCGTTCCCTTCCACAGTTTGAA
CGTTAGCATGCTGGTGCGCATCCTAACCGAGCCGCGAAACGCTCTAGTGC
CGCAATATAAGGCACTGTTGGGTCTTGATGAGGTGGACCTTACGTTCACC
GAGGATGCTGTGAAGTCGATAGCCCAGCTTGCAATGGAAAGGCACACTGG
AGCTCGTGGACTGCGCTCTATAATGGAACAACTGCTGCTGGATCCCATGT
TCATAGTGCCTGGTTCAGACATTCGGGGTGTTCACATAACCGCCGACTAT
GTTAAAGGCAGCGCCACCCCCGAGTACAGCCGCGATGCAGACGCCGCGGC
ATCTGGGACTGTTGCCACGGATTCCGATACCACAACCGATAATGATAAGA
ACTTTGAGAATAGTGAGAAAGTACGACTAAAACAGTAAAAGCTTTCTAGA
CCAT
BS23971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4538-RD | 2022 | CG4538-PD | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| CG4538-RA | 2022 | CG4538-PA | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| CG4538-RC | 2040 | CG4538-PC | 1..2004 | 17..2020 | 10020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4538-RD | 3865 | CG4538-RD | 791..2814 | 16..2039 | 10120 | 100 | Plus |
| CG4538-RA | 3126 | CG4538-RA | 337..2360 | 16..2039 | 10120 | 100 | Plus |
| CG4538-RC | 3244 | CG4538-RC | 791..2795 | 16..2020 | 10025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19900432..19901811 | 1453..74 | 6900 | 100 | Minus |
| 3R | 32079331 | 3R | 19899873..19900096 | 1826..1603 | 1120 | 100 | Minus |
| 3R | 32079331 | 3R | 19899595..19899809 | 2039..1825 | 1075 | 100 | Minus |
| 3R | 32079331 | 3R | 19900224..19900377 | 1604..1451 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 19902840..19902899 | 75..16 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:32:34 has no hits.
BS23971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:55 Download gff for
BS23971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 792..2811 | 17..2036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:05 Download gff for
BS23971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 792..2811 | 17..2036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:43 Download gff for
BS23971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 338..2357 | 17..2036 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:43 Download gff for
BS23971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19899598..19899808 | 1826..2036 | 100 | <- | Minus |
| 3R | 19899874..19900095 | 1604..1825 | 100 | <- | Minus |
| 3R | 19900225..19900374 | 1454..1603 | 100 | <- | Minus |
| 3R | 19900432..19901810 | 75..1453 | 100 | <- | Minus |
| 3R | 19902841..19902898 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:05 Download gff for
BS23971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15725320..15725530 | 1826..2036 | 100 | <- | Minus |
| arm_3R | 15725596..15725817 | 1604..1825 | 100 | <- | Minus |
| arm_3R | 15725947..15726096 | 1454..1603 | 100 | <- | Minus |
| arm_3R | 15726154..15727532 | 75..1453 | 100 | <- | Minus |
| arm_3R | 15728563..15728620 | 17..74 | 100 | | Minus |
BS23971.pep Sequence
Translation from 16 to 2037
> BS23971.pep
MSMVRRIILLGPKYSVWAKGSGAGQTHGSARCVILSAGSAENSDCGVRRF
HLATRNCARNRLMRLEPAMAIPAYIDVTNAHSRTPEDSSESGSGSEGGAS
ASGGSGAKSPGGAAGSGASSTSGADPPGGGSDKFLSCPKCGSACTQVETF
VSSTRFVKCAKCNYFFVVLSEVETKQRTKDEPKNQRKPPPPPQKIMEYLD
KHVVGQDFAKKVLAVAVYNHYKRIHHNLPQLQNQGAGASNGAGGGLDGIP
RPDLLHITGIGHTLNSSPGNELPPKSPTQMGMGGGMGGPGLGAGLTGASS
SNARGGGDNRSGSEILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKC
LDVPFAICDCTTLTQAGYVGEDIESVISKLLQDANYNVERAQTGIVFLDE
VDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTVVNVPERNSPRKLRGETV
QVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAA
SPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLV
RILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGARGLR
SIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSRDADAAASGTVA
TDSDTTTDNDKNFENSEKVRLKQ*
BS23971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4538-PD | 673 | CG4538-PD | 1..673 | 1..673 | 3472 | 100 | Plus |
| CG4538-PA | 673 | CG4538-PA | 1..673 | 1..673 | 3472 | 100 | Plus |
| CG4538-PC | 679 | CG4538-PC | 1..668 | 1..668 | 3449 | 100 | Plus |
