BS23974.complete Sequence
1028 bp assembled on 2011-02-03
GenBank Submission: KX802857
> BS23974.complete
GAAGTTATCAGTCGACATGATAAACAGCAAGATAAGAGAGGACAAGTTGG
AAACACTTGTCTCGCGAAGTTCTGTGCCGATCATCGATCTTGCCCATTGT
GGCAAGTCCCTTGTCCATCGGGTGGGTCAGCAACTCCACAAGGCTTTCAC
CGAAAAGGGAATTGCGTTTCTGGTTAACCATGGGATAGCAGAGGACAAGA
TCAAAGCTGTTTGGGATCAATTTGACAACTTCTTGGATCTGCCAGCAGAG
GTTCAGGATCGTTACAGACGAAAGGACGGTGTTAATTATGGATATGTTAG
TCCCGGGATGGAGCGATTTGATGGAAGTACTCCAGAACTGCGTCACGCCT
ACAATGTTTGCAAACTGGATGGACAGAATATTCCAAGGGAGGCACTGCCA
GAATTTGCCGAAGGCATTACCACACTGTGCACGGATTTGAAAGCCATGTC
TTTGTACATAATGAAGGCCATGGAGGTGGCCCTGGAGATTCCGCCGTCCT
TCTTCATCGACAAACACTCCCAGATGTTGGAAGGAGATGACCTAAACATG
ACCACCCTCAGGATGCTCTACTATCCGGCGATTGTGGATGATGAGCCGGG
CCAGAGCGAGGGTGCCATCCGTTGTGGTGCCCATGTGGACTACGGCACCT
TCACGCTGCTCGCCCAGGATTCCGAAGGTGGCTTGGAGGTGCAATTGCCG
GGCAGCGAAAAATGGGAACGGGTGGGTCATTTACCTGGTGCCATACTTAT
AAACGGCGGGGAACTTCTGTCCATCTGGACGAAGCAGCGTTACCACGCCC
TGCCTCATCGCGTCGTCATACCTGAACAAGAACTTATAAGAACCCGTGGC
AGACACTCCATAGCATATTTCTGCCATCCCAATAACTCGATCTTGATATC
TCCCAACGATCTGTTGAGTGAAGGGGAGGCAAAGAGTGAGGACAAAGTAT
ACAGCGCCTATGAACTGATACAGAAAAAGTTTAATGACACCTACGGTCAG
CGATCTCAATAAAAGCTTTCTAGACCAT
BS23974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33099-RA | 996 | CG33099-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
| CG5346-RA | 1212 | CG5346-PA | 790..881 | 635..726 | 205 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33099-RA | 1248 | CG33099-RA | 121..1116 | 17..1012 | 4980 | 100 | Plus |
| CG5346-RA | 1921 | CG5346-RA | 1269..1360 | 635..726 | 205 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22529385..22529989 | 802..198 | 3025 | 100 | Minus |
| 3R | 32079331 | 3R | 22529180..22529323 | 945..802 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 22530039..22530137 | 199..101 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 22530362..22530452 | 107..17 | 440 | 98.9 | Minus |
| 3R | 32079331 | 3R | 22529052..22529118 | 1012..946 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 22521111..22521202 | 726..635 | 205 | 81.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:04:19 has no hits.
BS23974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:29 Download gff for
BS23974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33099-RA | 104..1097 | 17..1010 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:03 Download gff for
BS23974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33099-RA | 121..1114 | 17..1010 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:48 Download gff for
BS23974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33099-RA | 121..1114 | 17..1010 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:48 Download gff for
BS23974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22529054..22529118 | 946..1010 | 100 | <- | Minus |
| 3R | 22529180..22529322 | 803..945 | 100 | <- | Minus |
| 3R | 22529385..22529987 | 200..802 | 100 | <- | Minus |
| 3R | 22530039..22530136 | 102..199 | 100 | <- | Minus |
| 3R | 22530368..22530452 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:03 Download gff for
BS23974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18354776..18354840 | 946..1010 | 100 | <- | Minus |
| arm_3R | 18354902..18355044 | 803..945 | 100 | <- | Minus |
| arm_3R | 18355107..18355709 | 200..802 | 100 | <- | Minus |
| arm_3R | 18355761..18355858 | 102..199 | 100 | <- | Minus |
| arm_3R | 18356090..18356174 | 17..101 | 100 | | Minus |
BS23974.pep Sequence
Translation from 16 to 1011
> BS23974.pep
MINSKIREDKLETLVSRSSVPIIDLAHCGKSLVHRVGQQLHKAFTEKGIA
FLVNHGIAEDKIKAVWDQFDNFLDLPAEVQDRYRRKDGVNYGYVSPGMER
FDGSTPELRHAYNVCKLDGQNIPREALPEFAEGITTLCTDLKAMSLYIMK
AMEVALEIPPSFFIDKHSQMLEGDDLNMTTLRMLYYPAIVDDEPGQSEGA
IRCGAHVDYGTFTLLAQDSEGGLEVQLPGSEKWERVGHLPGAILINGGEL
LSIWTKQRYHALPHRVVIPEQELIRTRGRHSIAYFCHPNNSILISPNDLL
SEGEAKSEDKVYSAYELIQKKFNDTYGQRSQ*
BS23974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33099-PA | 331 | CG33099-PA | 1..331 | 1..331 | 1740 | 100 | Plus |
| CG5346-PA | 403 | CG5346-PA | 1..401 | 1..330 | 1027 | 51.1 | Plus |
| CG33093-PA | 322 | CG33093-PA | 2..308 | 8..317 | 908 | 55.9 | Plus |
