BS23978.complete Sequence
2078 bp assembled on 2011-02-16
GenBank Submission: KX801812
> BS23978.complete
GAAGTTATCAGTCGACATGGAAGATCTCCTCGTGGAAGTTCGGCTCGACA
ATGGCGCCTACTACAAGGGCCAGGTGACAGCTGTCGCCGATGATGGCATC
TTTGTGGATGTGGACGGCGTGCCCGAGAGTATGAAATATCCATTTGTGAA
CGTTCGCCTGCCGCCCGAGGAAACCGTTGAGGTGGCCGCACCGATCTTCG
AGGAGGGCATGGAAGTGGAGGTGTTCACGCGCACGAACGATCGGGAAACC
TGCGGCTGGTGGGTGGGCATTATTAAAATGCGCAAAGCGGAAATCTATGC
GGTCGCGTACATCGGTTTTGAGACGTCCTACACCGAAATCTGTGAATTGG
GTCGTCTGCGCGCCAAAAACTCGAATCCGCCAATTACAGCCAAGACCTTC
TACCAGTTCACGCTGCCCGTGCCCGAGGAGTTGCGCGAAGAAGCCCAGAA
GGATGGTATACACAAGGAGTTTCAGCGCACAATCGATGCCGGCGTGTGCA
ACTACAGTCGCGATCTGGACGCCCTGATTGTCATCTCCAAGTTTGAGCAC
ACTCAGAAGCGAGCCAGTATGCTCAAGGATATGCATTTTCGTAATCTCTC
ACAAAAGGTTATGCTGTTGAAAAGGACTGAAGAAGCTGCCCGTCAGCTCG
AAACAACTAAACTGATGAGCCGTGGAAACTACGTTGAGGAGTTCCGTGTG
CGTGACGATCTCATGGGTTTGGCGATTGGCTCGCATGGCTCGAATATTCA
AGCGGCACGCACTGTGGACGGCGTCACCAACATCGAGCTGGAGGAGAAGT
CCTGCACATTCAAAATCAGCGGAGAGACCGAGGAGTCTGTGCAGCGTGCC
CGCGCGATGCTCGAATACGCCGAGGAGTTCTTCCAGGTGCCCAGGGAGTT
GGTGGGCAAGGTGATTGGCAAGAATGGGCGCATTATCCAGGAGATTGTGG
ACAAGAGTGGCGTGTTTCGAATCAAGATCGCTGGCGACGATGAACAGGAT
CAGAACATACCACGTGAGCTGGCGCATGTACCCTTTGTGTTCATTGGCAC
CGTGGAGAGCATTGCAAATGCCAAAGTGCTGTTGGAGTATCATCTGTCGC
ACCTGAAGGAAGTAGAACAGTTGCGTCAGGAGAAGATGGAGATTGATCAG
CAGCTTCGCGCCATCCAGGAATCCTCCATGGGCTCCACACAGAGCTTCCC
AGTGACGCGGCGCTCTGAGCGCGGCTACAGCAGTGACATTGAGTCGGTGC
GCTCTATGCGCGGCGGTGGTGGCGGCCAGCGTGGTCGTGTACGCGGACGT
GGTGGTGGCGGTCCTGGAGGTGGCAATGGCCTGAACCAGCGCTACCACAA
CAATCGCCGCGACGAGGATGACTACAACTCGCGGGGCGATCATCAGCGTG
ACCAGCAGCGTGGCTACAACGATCGCGGCGGTGGTGACAACACTGGCAGC
TATCGTGGAGGCGGTGGTGGCGCCGGTGGTCCTGGCAACAACAGGCGCGG
CGGAATCAACCGCCGGCCGCCACGCAACGATCAGCAGAATGGCAGGGACT
ATCAGCACCACAACCACACCACCGAAGAGGTGCGGGAGACCCGTGAAATG
AGCAGCGTGGAGAGAGCGGACAGTAACTCATCGTACGAAGGTAGCTCGCG
GAGGCGCAGAAGGCAGAAGAACAACAATGGACCCAGTAACACAAACGGAG
CTGTTGCCAATAACAACAACAAACCTCAGTCGGCGCAGCAGCCACAACAG
CAGCAGCCGCCGGCGCCTGGGAATAAGGCGGCACTAAATGCCGGAGATGC
CAGCAAACAGAACAGCGGCAATGCGAACGCCGCTGGCGGTGCGAGCAAGC
CGAAGGATGCCTCACGCAACGGCGACAAGCAGCAGGCGGGCACACAGCAG
CAACAGCCATCGCAGGTACAACAGCAGCAGGCGGCACAGCAGCAGCAGCC
GAAACCGCGACGCAACAAGAATCGCAGCAACAACCACACGGACCAGCCAT
CCGGACAGCAGCAGCTGGCGGAGAATGTCAAAAAGGAGGGCCTGGTCAAT
GGCACGTCCTAAAAGCTTTCTAGACCAT
BS23978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RG | 2190 | CG6203-PG | 141..2190 | 13..2062 | 10235 | 100 | Plus |
| Fmr1-RK | 2046 | CG6203-PK | 1..2046 | 17..2062 | 10230 | 100 | Plus |
| Fmr1-RJ | 2046 | CG6203-PJ | 1..2046 | 17..2062 | 10230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RG | 4426 | CG6203-RG | 565..2614 | 13..2062 | 10235 | 100 | Plus |
| Fmr1-RK | 2835 | CG6203-RK | 279..2328 | 13..2062 | 10235 | 100 | Plus |
| Fmr1-RJ | 2985 | CG6203-RJ | 429..2478 | 13..2062 | 10235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10104289..10104798 | 1616..1107 | 2550 | 100 | Minus |
| 3R | 32079331 | 3R | 10103232..10103602 | 2062..1692 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 10105790..10106114 | 441..117 | 1625 | 100 | Minus |
| 3R | 32079331 | 3R | 10105069..10105370 | 976..675 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 609..442 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 10104878..10105012 | 1109..975 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 10103673..10103749 | 1691..1615 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 675..604 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 10108694..10108749 | 68..13 | 265 | 98.2 | Minus |
| 3R | 32079331 | 3R | 10107430..10107481 | 117..66 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6929 | 1804..2021 | 219 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..7010 | 1708..1996 | 218 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7055 | 1657..1966 | 212 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6653..6856 | 1818..2017 | 208 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2642 | 1684..2017 | 181 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..7070 | 1670..2027 | 167 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2418 | 1889..2015 | 164 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2527 | 1704..1929 | 162 | 55.9 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4490..4624 | 1696..1831 | 119 | 55.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1101..1145 | 1722..1766 | 117 | 73.3 | Plus |
BS23978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-16 15:09:59 Download gff for
BS23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RC | 569..2612 | 17..2060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:47 Download gff for
BS23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RD | 415..2458 | 17..2060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:48 Download gff for
BS23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RJ | 433..2476 | 17..2060 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:48 Download gff for
BS23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10103234..10103602 | 1692..2060 | 100 | <- | Minus |
| 3R | 10103673..10103747 | 1617..1691 | 100 | <- | Minus |
| 3R | 10104289..10104796 | 1109..1616 | 100 | <- | Minus |
| 3R | 10104879..10105010 | 977..1108 | 100 | <- | Minus |
| 3R | 10105069..10105369 | 676..976 | 100 | <- | Minus |
| 3R | 10105434..10105501 | 608..675 | 100 | <- | Minus |
| 3R | 10105559..10105724 | 442..607 | 100 | <- | Minus |
| 3R | 10105790..10106113 | 118..441 | 100 | <- | Minus |
| 3R | 10107430..10107479 | 68..117 | 100 | <- | Minus |
| 3R | 10108695..10108745 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:47 Download gff for
BS23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5931281..5931446 | 442..607 | 100 | <- | Minus |
| arm_3R | 5931156..5931223 | 608..675 | 100 | <- | Minus |
| arm_3R | 5928956..5929324 | 1692..2060 | 100 | <- | Minus |
| arm_3R | 5929395..5929469 | 1617..1691 | 100 | <- | Minus |
| arm_3R | 5930011..5930518 | 1109..1616 | 100 | <- | Minus |
| arm_3R | 5930601..5930732 | 977..1108 | 100 | <- | Minus |
| arm_3R | 5930791..5931091 | 676..976 | 100 | <- | Minus |
| arm_3R | 5931512..5931835 | 118..441 | 100 | <- | Minus |
| arm_3R | 5933152..5933201 | 68..117 | 100 | <- | Minus |
| arm_3R | 5934417..5934467 | 17..67 | 100 | | Minus |
BS23978.pep Sequence
Translation from 16 to 2061
> BS23978.pep
MEDLLVEVRLDNGAYYKGQVTAVADDGIFVDVDGVPESMKYPFVNVRLPP
EETVEVAAPIFEEGMEVEVFTRTNDRETCGWWVGIIKMRKAEIYAVAYIG
FETSYTEICELGRLRAKNSNPPITAKTFYQFTLPVPEELREEAQKDGIHK
EFQRTIDAGVCNYSRDLDALIVISKFEHTQKRASMLKDMHFRNLSQKVML
LKRTEEAARQLETTKLMSRGNYVEEFRVRDDLMGLAIGSHGSNIQAARTV
DGVTNIELEEKSCTFKISGETEESVQRARAMLEYAEEFFQVPRELVGKVI
GKNGRIIQEIVDKSGVFRIKIAGDDEQDQNIPRELAHVPFVFIGTVESIA
NAKVLLEYHLSHLKEVEQLRQEKMEIDQQLRAIQESSMGSTQSFPVTRRS
ERGYSSDIESVRSMRGGGGGQRGRVRGRGGGGPGGGNGLNQRYHNNRRDE
DDYNSRGDHQRDQQRGYNDRGGGDNTGSYRGGGGGAGGPGNNRRGGINRR
PPRNDQQNGRDYQHHNHTTEEVRETREMSSVERADSNSSYEGSSRRRRRQ
KNNNGPSNTNGAVANNNNKPQSAQQPQQQQPPAPGNKAALNAGDASKQNS
GNANAAGGASKPKDASRNGDKQQAGTQQQQPSQVQQQQAAQQQQPKPRRN
KNRSNNHTDQPSGQQQLAENVKKEGLVNGTS*
BS23978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-PG | 729 | CG6203-PG | 49..729 | 1..681 | 3541 | 100 | Plus |
| Fmr1-PK | 681 | CG6203-PK | 1..681 | 1..681 | 3541 | 100 | Plus |
| Fmr1-PJ | 681 | CG6203-PJ | 1..681 | 1..681 | 3541 | 100 | Plus |
| Fmr1-PC | 681 | CG6203-PC | 1..681 | 1..681 | 3541 | 100 | Plus |
| Fmr1-PD | 681 | CG6203-PD | 1..681 | 1..681 | 3541 | 100 | Plus |
