BS23979.complete Sequence
1088 bp assembled on 2011-02-03
GenBank Submission: KX802212
> BS23979.complete
GAAGTTATCAGTCGACATGGTCACATACAATACTCTAATACAGAACGAAA
AGAATGAAAATGTGGTCGCCCCGATAAGCCGGCCATTCGCCAGAAAGAGG
AGGACTGAGATTCGCCGCCTGCAGTCCAACAGGCGGTTGAATAAAAAGGT
GTGCAAACACCATTTGGACATTGCCCATTGTACCCAGAAGAAGGCTCCAT
GGCGGAATTGGGCATACCTCATTCTCGCCCTCGCCGCAGGAATTGGCATG
TTATTGCAGTTCACCGACAAGTTGTCCACGGTCAGCGGATTCCTGGAAAG
CTACAAAAACCAGTACCACTCGATCGTCCACAACCAGGACAACTACTGCA
ATCCCTCCCGACGGCTGGGCGACATGGTCCTGCACGCCCGCCACCAGGTA
CTCAACCAGGATCTTGCATTGAACCAGCTAGAACTGGCACTGGACAACAC
CACCAATGAGGCAATCGTCTTGGTGGGCACCTCTGGCGTAGGCAAGAGCC
ACACTGCGCGAATCTTGCGCGAAACGTTTCCCTGGCCCGAGAACGTGAAT
ACACTCTCCTGGACCGGCAGTTCTTCTTTGGGCCGAGTGAAGAGCATGCT
ATCCGGCCTGACATATTGCGGACAGAATATGATCTTGATTGATAACATGA
CGCCGAAGGATGCACACTTCGTGCCTATCATTAACGAAATGATAAGTGAG
GGCGAAAAGAGCGCCAACCACACTGAGCATCCGCAACAGAAGCGGTTGAC
CATTGTGTTTATCTTTAATGTGAATAGCATGCAGCCCGGCGAGGAGTTTG
AGATGGATATGGAGATCCTTAGAAATATGCCACACACCCAGTTGGTCACC
TTTGCGACTCTGGATCCCACCCATCTGGTCGACTGCATCCGCAGGGAAGC
CGCCATCGCAATGGTGCACCTGGAAGACGAGCACGTAGAAGAGATAATCA
AAAGTATCGATGCTAGCGCTTCTGGCTGCAAGTCGATTTTGGCCAAGGTC
CTGCTCTACGGCAAACCAATAATCGCAGACTCCCAGGATACTGACCAAGT
CCTTCCAGTAGGTTCCTTTTAGAAGCTTTCTAGACCAT
BS23979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4880-RA | 1056 | CG4880-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| CG4880-RB | 993 | CG4880-PB | 380..993 | 459..1072 | 3070 | 100 | Plus |
| CG4880-RB | 993 | CG4880-PB | 1..382 | 17..398 | 1910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4880-RA | 1700 | CG4880-RA | 150..1212 | 17..1079 | 5285 | 99.8 | Plus |
| CG4880-RB | 1505 | CG4880-RB | 529..1149 | 459..1079 | 3075 | 99.7 | Plus |
| CG4880-RB | 1505 | CG4880-RB | 150..531 | 17..398 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16887621..16888241 | 459..1079 | 3075 | 99.7 | Plus |
| X | 23542271 | X | 16886967..16887411 | 17..461 | 2225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:03:52 has no hits.
BS23979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:28 Download gff for
BS23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 138..1193 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:51 Download gff for
BS23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 150..1205 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:35 Download gff for
BS23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 150..1205 | 17..1072 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:35 Download gff for
BS23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16886967..16887410 | 17..460 | 100 | -> | Plus |
| X | 16887623..16888234 | 461..1072 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:51 Download gff for
BS23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16781000..16781443 | 17..460 | 100 | -> | Plus |
| arm_X | 16781656..16782267 | 461..1072 | 100 | | Plus |
BS23979.pep Sequence
Translation from 16 to 1071
> BS23979.pep
MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL
DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY
HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI
VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY
CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIF
NVNSMQPGEEFEMDMEILRNMPHTQLVTFATLDPTHLVDCIRREAAIAMV
HLEDEHVEEIIKSIDASASGCKSILAKVLLYGKPIIADSQDTDQVLPVGS
F*
BS23979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4880-PA | 351 | CG4880-PA | 1..351 | 1..351 | 1825 | 100 | Plus |
| CG4880-PB | 330 | CG4880-PB | 1..330 | 1..351 | 1691 | 94 | Plus |
| CG7557-PB | 336 | CG7557-PB | 104..333 | 104..332 | 297 | 32.5 | Plus |
| CG7557-PA | 355 | CG7557-PA | 123..352 | 104..332 | 297 | 32.5 | Plus |
