Clone BS23981 Report

Search the DGRC for BS23981

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:239
Well:81
Vector:pDNR-Dual
Associated Gene/Transcripthow-RA
Protein status:BS23981.pep: full length peptide match
Sequenced Size:1250

Clone Sequence Records

BS23981.complete Sequence

1250 bp assembled on 2011-01-28

GenBank Submission: KX805681

> BS23981.complete
GAAGTTATCAGTCGACATGAGTGTCTGTGAGAGCAAAGCCGTTGTGCAAC
AGCAACTGCAGCAGCACTTGCAGCAACAGGCAGCCGCAGCAGTTGTTGCG
GTCGCGCAACAGCAGCAGGCTCAAGCCCAAGCCCAGGCTCAGGCTCAGGC
ACAGCAGCAGCAACAGGCGCCGCAGGTGGTGGTCCCCATGACCCCGCAGC
ACTTGACCCCACAGCAGCAGCAGCAGAGCACACAGAGCATCGCCGACTAT
CTGGCCCAGTTGCTCAAGGACCGCAAGCAACTGGCCGCCTTCCCCAACGT
CTTCACCCACGTCGAACGCCTGCTGGACGAAGAAATTGCACGCGTGCGCG
CCTCACTGTTCCAGATCAATGGGGTCAAGAAGGAGCCGCTCACTCTGCCC
GAACCCGAGGGCTCTGTGGTGACGATGAACGAGAAGGTTTATGTGCCAGT
CCGCGAGCATCCAGATTTCAACTTTGTCGGTCGCATTTTGGGACCCCGTG
GCATGACCGCCAAGCAATTGGAACAGGAGACCGGCTGCAAGATTATGGTC
CGAGGCAAGGGTTCCATGCGCGACAAGAAGAAGGAGGACGCCAACCGTGG
CAAGCCTAACTGGGAGCATCTGTCCGATGACCTGCATGTCCTGATAACCG
TCGAGGACACCGAGAACCGTGCCACAGTGAAGTTGGCCCAGGCCGTCGCC
GAAGTACAGAAGTTGCTCGTGCCGCAAGCCGAAGGCGAAGATGAGCTAAA
GAAACGTCAACTCATGGAATTGGCGATTATTAATGGCACTTATAGGGACA
CAACAGCGAAATCTGTCGCAGTGTGCGATGAGGAGTGGCGCCGCCTGGTT
GCCGCCTCTGATAGCCGCCTGCTGACATCCACCGGCCTGCCCGGCCTTGC
CGCCCAGATCCGTGCACCCGCCGCCGCCCCGCTTGGCGCCCCATTGATCC
TGAATCCCCGGATGACCGTCCCCACAACGGCGGCCAGCATATTGTCCGCC
CAGGCCGCTCCGACAGCCGCCTTCGACCAGACCGGCCATGGAATGATCTT
CGCACCGTACGATTATGCGAACTACGCCGCCCTAGCCGGCAATCCTCTGC
TCACGGAATATGCTGATCATAGCGTAGGCGCCATTAAGCAGCAGCGTCGT
TTGGCGACTAACCGCGAGCATCCCTATCAGCGAGCAACGGTCGGAGTGCC
AGCCAAGCCGGCGGGTTTCATTGAGATACAGTAAAAGCTTTCTAGACCAT

BS23981.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
how-RD 1218 CG10293-PD 1..1218 17..1234 6090 100 Plus
how-RA 1218 CG10293-PA 1..1218 17..1234 6090 100 Plus
how-RE 1215 CG10293-PE 1..1215 17..1234 6010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
how-RD 3884 CG10293-RD 323..1541 17..1235 6095 100 Plus
how-RA 3964 CG10293-RA 323..1541 17..1235 6095 100 Plus
how-RE 3103 CG10293-RE 323..1538 17..1235 6015 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22043064..22043379 17..332 1580 100 Plus
3R 32079331 3R 22071734..22072041 817..1124 1540 100 Plus
3R 32079331 3R 22070805..22070947 582..724 715 100 Plus
3R 32079331 3R 22062723..22062858 331..466 680 100 Plus
3R 32079331 3R 22069111..22069228 467..584 590 100 Plus
3R 32079331 3R 22074448..22074559 1124..1235 560 100 Plus
3R 32079331 3R 22071332..22071429 724..821 490 100 Plus
Blast to na_te.dros performed 2014-11-26 16:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6858 81..225 157 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2276..2467 32..225 153 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2502 106..307 133 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6827 140..241 132 62.3 Plus

BS23981.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:33 Download gff for BS23981.complete
Subject Subject Range Query Range Percent Splice Strand
how-RD 322..1537 17..1232 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:47 Download gff for BS23981.complete
Subject Subject Range Query Range Percent Splice Strand
how-RA 323..1538 17..1232 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:39 Download gff for BS23981.complete
Subject Subject Range Query Range Percent Splice Strand
how-RA 323..1538 17..1232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:39 Download gff for BS23981.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22074449..22074556 1125..1232 100   Plus
3R 22070807..22070947 584..724 100 -> Plus
3R 22071333..22071429 725..821 100 -> Plus
3R 22043064..22043379 17..332 100 -> Plus
3R 22062725..22062858 333..466 100 -> Plus
3R 22069111..22069227 467..583 100 -> Plus
3R 22071739..22072041 822..1124 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:47 Download gff for BS23981.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17896529..17896669 584..724 100 -> Plus
arm_3R 17897055..17897151 725..821 100 -> Plus
arm_3R 17868786..17869101 17..332 100 -> Plus
arm_3R 17888447..17888580 333..466 100 -> Plus
arm_3R 17894833..17894949 467..583 100 -> Plus
arm_3R 17897461..17897763 822..1124 100 -> Plus
arm_3R 17900171..17900278 1125..1232 100   Plus

BS23981.pep Sequence

Translation from 16 to 1233

> BS23981.pep
MSVCESKAVVQQQLQQHLQQQAAAAVVAVAQQQQAQAQAQAQAQAQQQQQ
APQVVVPMTPQHLTPQQQQQSTQSIADYLAQLLKDRKQLAAFPNVFTHVE
RLLDEEIARVRASLFQINGVKKEPLTLPEPEGSVVTMNEKVYVPVREHPD
FNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWE
HLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLM
ELAIINGTYRDTTAKSVAVCDEEWRRLVAASDSRLLTSTGLPGLAAQIRA
PAAAPLGAPLILNPRMTVPTTAASILSAQAAPTAAFDQTGHGMIFAPYDY
ANYAALAGNPLLTEYADHSVGAIKQQRRLATNREHPYQRATVGVPAKPAG
FIEIQ*

BS23981.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
how-PD 405 CG10293-PD 1..405 1..405 2042 100 Plus
how-PA 405 CG10293-PA 1..405 1..405 2042 100 Plus
how-PE 404 CG10293-PE 1..404 1..405 2026 99.8 Plus
how-PF 418 CG10293-PF 1..418 1..405 2001 96.4 Plus
how-PC 380 CG10293-PC 1..371 1..371 1868 100 Plus