BS23985.complete Sequence
2063 bp assembled on 2011-02-18
GenBank Submission: KX800948
> BS23985.complete
GAAGTTATCAGTCGACATGGATTTAACAGATCCATTATTAATTACAAAGT
CTCAGCAAGTCAACAGCCAAGAAGTTGATTTTCAGAAAAAAACTGAGGAT
ACATTTCCTTCAAAGTTTCATAAAAATAAAGCTAGTTGTGGACTTTTGGC
TGTTAATGAAAGTCGCTGTACAGACCATCAATTACAATGTGAAAACAATA
TCGTGGGGTTGTCATTAGAAACTCAAATTGCAGAAAATTCTTCAATAAAT
GTTTCGAGAGAACTTAAACCTCACGATCACACTTTTCCGAAAGATAAACA
AACTTTTAAACAAATATCAGATGAATTAAGGAAGTCATATGAAAATATTA
ATAAAGTTCAGAATATTAAAAAATCCCAGTCTGTAGAAAATTTTGAAAAA
TGTTCTGAAATAAATTTAGCCAATAAATGTTTATATACAAATTTAAATAC
AAGTCCTAAGGAAAGAAATGCCTTGGATAAGCAAGCAATGTTTATTAAAT
TTCATTCTCTGGAATTGTGCACTGATAAAGTATGTAGTCTACACATACAT
GAAAACTTTTGTACTGATATCCATAAATGCGTAGTCGATTCCGAATCGAA
TAAGCCAAACAAAATGAAAAAGTGCTTAGATTATGAAAGCGTTAAAAGGT
ATCCTTGTAAAGTTTCTAATGAACCACCTCAACATAATACGGCATCAAAA
CCTCAAATCTTATATGAGACTCGTCCTATCTACCCGAATGTACCGTATAG
CCCTTATAGTACTCCTTTCAGTAGTCCTCGATCTAGTCGACGGAAACCAG
CTTTTCGGGAGTCTAGAAGGATATCGATTGATAAATCTGGAAGTTTTCTT
CAGTTAAACCAATATAGACTAATGGAACAAATTGGACAGGGATCCTACGG
ACTCGTTAAATTGGCTTACTCCGAAGAAGATTCCACTCATTATGCAATGA
AAATTCTTTCAAAAAAACGTCTCCTGCGTCAAGCTGGTCTTATGCGGCGA
GGACCTCGGAAAGCAACATCACCTCTAGATCGAGTTTACAGAGAAATAGC
AGTTTTAAAGAAACTTGATCATCCAAACGTCGTAAAGTTGGTAGAAGTGC
TGGATGACCCACTTGAAGATTCATTATATATGGTTTTTGAATTGGTAAAA
CAAGGTGAAGTTCTTAGGATTCCAACAGATAATCCCTTGTCTGAAAAAAG
GGCTTGGAGTATATTTCGGGAGTCTTTACTTGGATTGGAATATTTGCATC
ATCAAAAAATTATCCATGCCGACATTAAGCCTGGAAATTTATTATTAACT
GAATTTGGACATGTAAAAATAGCTGATCTTGGCGTATGCAATGAGTTCCT
TGGAGATGATGCAACAATAAGTAATGGATCAACGGCTGGAACTCCAGCTT
TCAGGGCTCCTGAAACTCTTATCCCTGGACAGAACGAATATTGTGGCAGG
GCGGCAGATGTCTGGGCCTTAGGCGCTACTCTATATTCCTTAATATTCGG
AAATGTGCCGTTTCTAGCTGATTCAGTACCCTTACTGTATGAAAAAATTA
AACAAGATTCTGTCAAATTTCCAGAAAACCACAAAGTAACTGAAAATTTA
AAAAGTTGCATAGTTCAAATGTTGGAAAAGAATCCGACGCAGAGAATTAC
TATTCCCCAGTTAAAGACTAGTAAATGGGTAACTTCTGATGGGGACTATC
CCTTGCCGACCGAAGAAGAAAATTGTTGCTTGGTACAAGTAGACGACGAA
GATATAGACTCCGTCGTGCGCAGCATTCCTAAATTGGACACACTTATATT
AATTAAAACAATGTTAAAAAAGCATTCATTTGGCAACCCGTTTGTAAAAG
GATGTTCTGGAACATCATCATCACTCGCGGGCTGCTCGAGGATTGAAAGG
TTCATACGCGCAGGTCGATCTAATTCAGCACCTGGTTCATATCATATGTC
AACAGCCAGACAGCCTTCGTCGGATACTCTCCTGCCATCACTAATGGAAC
ATTGCTCTACTCAATGTAATGAAGGAACTCATAGTTTTGATTATTAGAAG
CTTTCTAGACCAT
BS23985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-RD | 2031 | CG17698-PD | 1..2031 | 17..2047 | 10155 | 100 | Plus |
| CG17698-RF | 2085 | CG17698-PF | 1..1228 | 17..1244 | 6140 | 100 | Plus |
| CG17698-RE | 1851 | CG17698-PE | 1..1228 | 17..1244 | 6140 | 100 | Plus |
| CG17698-RF | 2085 | CG17698-PF | 1283..2085 | 1245..2047 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-RD | 2506 | CG17698-RD | 277..2309 | 17..2049 | 10165 | 100 | Plus |
| CG17698-RF | 2560 | CG17698-RF | 277..1504 | 17..1244 | 6140 | 100 | Plus |
| CG17698-RE | 2326 | CG17698-RE | 277..1504 | 17..1244 | 6140 | 100 | Plus |
| CG17698-RF | 2560 | CG17698-RF | 1559..2363 | 1245..2049 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23740212..23741085 | 17..890 | 4370 | 100 | Plus |
| 3L | 28110227 | 3L | 23746188..23746544 | 888..1244 | 1785 | 100 | Plus |
| 3L | 28110227 | 3L | 23748422..23748716 | 1665..1959 | 1475 | 100 | Plus |
| 3L | 28110227 | 3L | 23748138..23748373 | 1431..1666 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 23747873..23748060 | 1245..1432 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 23748770..23748861 | 1958..2049 | 460 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord | 7404 | accord ACCORD 7404bp | 3447..3546 | 248..345 | 117 | 59 | Plus |
BS23985.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:31 Download gff for
BS23985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RB | 279..2309 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:08 Download gff for
BS23985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RD | 277..2307 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:55 Download gff for
BS23985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RD | 277..2307 | 17..2047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:55 Download gff for
BS23985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23740212..23741084 | 17..889 | 100 | -> | Plus |
| 3L | 23746190..23746544 | 890..1244 | 100 | -> | Plus |
| 3L | 23747873..23748060 | 1245..1432 | 100 | -> | Plus |
| 3L | 23748140..23748373 | 1433..1666 | 100 | -> | Plus |
| 3L | 23748424..23748716 | 1667..1959 | 100 | -> | Plus |
| 3L | 23748772..23748859 | 1960..2047 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:08 Download gff for
BS23985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23733312..23734184 | 17..889 | 100 | -> | Plus |
| arm_3L | 23739290..23739644 | 890..1244 | 100 | -> | Plus |
| arm_3L | 23740973..23741160 | 1245..1432 | 100 | -> | Plus |
| arm_3L | 23741240..23741473 | 1433..1666 | 100 | -> | Plus |
| arm_3L | 23741524..23741816 | 1667..1959 | 100 | -> | Plus |
| arm_3L | 23741872..23741959 | 1960..2047 | 100 | | Plus |
BS23985.pep Sequence
Translation from 16 to 2046
> BS23985.pep
MDLTDPLLITKSQQVNSQEVDFQKKTEDTFPSKFHKNKASCGLLAVNESR
CTDHQLQCENNIVGLSLETQIAENSSINVSRELKPHDHTFPKDKQTFKQI
SDELRKSYENINKVQNIKKSQSVENFEKCSEINLANKCLYTNLNTSPKER
NALDKQAMFIKFHSLELCTDKVCSLHIHENFCTDIHKCVVDSESNKPNKM
KKCLDYESVKRYPCKVSNEPPQHNTASKPQILYETRPIYPNVPYSPYSTP
FSSPRSSRRKPAFRESRRISIDKSGSFLQLNQYRLMEQIGQGSYGLVKLA
YSEEDSTHYAMKILSKKRLLRQAGLMRRGPRKATSPLDRVYREIAVLKKL
DHPNVVKLVEVLDDPLEDSLYMVFELVKQGEVLRIPTDNPLSEKRAWSIF
RESLLGLEYLHHQKIIHADIKPGNLLLTEFGHVKIADLGVCNEFLGDDAT
ISNGSTAGTPAFRAPETLIPGQNEYCGRAADVWALGATLYSLIFGNVPFL
ADSVPLLYEKIKQDSVKFPENHKVTENLKSCIVQMLEKNPTQRITIPQLK
TSKWVTSDGDYPLPTEEENCCLVQVDDEDIDSVVRSIPKLDTLILIKTML
KKHSFGNPFVKGCSGTSSSLAGCSRIERFIRAGRSNSAPGSYHMSTARQP
SSDTLLPSLMEHCSTQCNEGTHSFDY*
BS23985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-PD | 676 | CG17698-PD | 1..676 | 1..676 | 3548 | 100 | Plus |
| CG17698-PF | 694 | CG17698-PF | 1..694 | 1..676 | 3516 | 97.3 | Plus |
| CG17698-PE | 616 | CG17698-PE | 1..490 | 1..472 | 2436 | 96.1 | Plus |
| CG17698-PA | 366 | CG17698-PA | 1..366 | 311..676 | 1909 | 100 | Plus |
| CG17698-PE | 616 | CG17698-PE | 490..616 | 550..676 | 673 | 99.2 | Plus |
| lkb1-PJ | 567 | CG9374-PJ | 162..437 | 273..557 | 386 | 33.4 | Plus |
