BS23987.complete Sequence
3800 bp assembled on 2011-02-18
GenBank Submission: KX805490
> BS23987.complete
GAAGTTATCAGTCGACATGCCTGTGGTAAAACAGCGGAAAATGAGCCGCT
TTAAGATGTCCCCCGGCGCCCATTTGCAGATGTCCCCGCAGAACACTTCG
TCCCTAAGTCAACACCATCCACATCAACAGCAACAGTTACAACCCCCACA
GCAGCAACAACAGCATTTCCCTAACCATCACAGCGCCCAGCAACAGTCGC
AGCAGCAGCAGCAACAGGAGCAACAGAATCCCCAGCAGCAGGCGCAACAG
CAGCAGCAGATACTCCCACATCAACATTTGCAGCACCTGCACAAGCATCC
GCATCAGCTGCAACTGCATCAGCAGCAGCAACAACAACTCCACCAGCAAC
AGCAGCAACACTTCCACCAGCAGTCGCTGCAAGGGCTGCATCAGGGTAGC
AGCAATCCGGATTCGAATATGAGCACTGGCTCCTCGCATAGCGAGAAGGA
TGTCAATGATATGCTGAGTGGCGGTGCAGCAACGCCAGGAGCTGCAGCAG
CAGCGATTCAACAGCAACATCCCGCCTTTGCGCCCACACTGGGAATGCAG
CAACCACCGCCGCCCCCACCTCAACACTCCAATAATGGAGGCGAGATGGG
CTACTTGTCGGCAGGCACGACCACGACGACGTCGGTGTTAACGGTAGGCA
AGCCTCGGACGCCAGCGGAGCGGAAACGGAAGCGAAAAATGCCTCCATGT
GCCACTAGTGCGGATGAGGCGGGGAGTGGCGGTGGCTCTGGCGGAGCAGG
AGCAACCGTTGTTAACAACAGCAGCCTGAAGGGCAAATCATTGGCCTTTC
GTGATATGCCCAAGGTAAACATGAGCCTGAATCTGGGCGATCGTCTGGGA
GGATCTGCAGGAAGCGGAGTAGGAGCCGGTGGCGCCGGAAGCGGGGGAGG
TGGCGCTGGTTCCGGTTCTGGAAGCGGTGGCGGCAAAAGCGCCCGCCTGA
TGCTGCCAGTCAGCGACAACAAGAAGATCAACGACTATTTCAATAAGCAG
CAAACGGGCGTGGGCGTCGGTGTGCCAGGTGGTGCGGGAGGCAATACCGC
TGGCCTTCGAGGATCACATACGGGAGGTGGCAGCAAGTCACCCTCATCCG
CCCAGCAGCAGCAAACGGCGGCACAGCAGCAGGGAAGCGGTGTTGCGACG
GGAGGCAGTGCAGGCGGTTCCGCTGGCAACCAGGTGCAAGTGCAAACGAG
CAGCGCTTACGCCCTTTACCCACCAGCTAGTCCCCAAACCCAGACGTCAC
AGCAACAGCAGCAGCAGCAACCGGGATCAGACTTTCACTATGTCAACTCC
AGCAAGGCGCAGCAACAACAGCAGCGTCAACAGCAACAGACTTCCAATCA
AATGGTTCCTCCACACGTGGTCGTTGGCCTTGGTGGTCATCCACTGAGCC
TCGCGTCCATTCAGCAGCAGACGCCCTTATCCCAGCAGCAACAGCAGCAA
CAACAGCAGCAGCAACAGCAGCAACTGGGACCACCGACCACATCGACGGC
CTCCGTCGTGCCAACGCATCCGCATCAACTCGGATCCCTGGGAGTTGTTG
GGATGGTCGGTGTGGGTGTTGGCGTGGGCGTTGGAGTAAATGTGGGTGTG
GGACCACCACTGCCACCACCACCGCCGATGGCCATGCCAGCGGCCATTAT
CACTTATAGTAAGGCCACTCAAACGGAGGTGTCGCTGCATGAATTGCAGG
AGCGCGAAGCGGAGCACGAATCGGGCAAGGTGAAGCTAGACGAGATGACA
CGGCTGTCCGATGAACAAAAGTCCCAAATTGTTGGCAACCAGAAGACGAT
TGACCAGCACAAGTGCCACATAGCCAAGTGTATTGATGTGGTCAAGAAGC
TGTTGAAAGAGAAGAGCAGCATCGAGAAGAAGGAGGCGCGACAGAAATGC
ATGCAGAATCGCCTCAGGCTCGGACAGTTTGTTACCCAACGAGTGGGCGC
CACATTCCAGGAGAACTGGACGGACGGCTATGCGTTCCAGGAGCTGAGTC
GGCGGCAAGAAGAAATAACCGCTGAGCGTGAAGAGATAGATCGGCAGAAA
AAGCAGCTGATGAAAAAGCGTCCGGCGGAGTCCGGACGCAAGCGCAACAA
CAACAGTAACCAGAACAACCAGCAGCAGCAGCAACAGCAACACCAGCAAC
AGCAGCAGCAACAAAATTCCAACTCGAACGATTCCACGCAGCTGACGAGC
GGAGTTGTTACCGGTCCAGGCAGTGATCGTGTGAGCGTAAGCGTCGACAG
CGGATTGGGTGGCAATAATGCGGGCGCGATCGGTGGCGGAACCGTTGGTG
GTGGCGTTGGAGGTGGTGGTGTTGGAGGCGGTGGTGTCGGAGGCGGCGGT
GGACGTGGACTTTCTCGCAGCAATTCGACGCAGGCCAATCAGGCTCAATT
GCTGCACAACGGCGGTGGTGGTTCGGGCGGCAATGTCGGCAACTCGGGCG
GCGTTGGCGACCGCTTGTCAGATCGAGGAGGAGGAGGTGGCGGCATCGGC
GGAAACGATAGCGGCAGCTGCTCGGACTCGGGCACTTTCCTGAAGCCAGA
CCCCGTATCGGGTGCCTACACAGCGCAGGAGTATTACGAGTACGATGAGA
TCCTCAAGTTGCGACAAAATGCCCTCAAAAAGGAGGACGCCGACCTGCAG
CTGGAGATGGAGAAGCTGGAGCGGGAGCGCAATCTGCACATCCGAGAGCT
CAAGCGGATTCTTAACGAGGATCAGTCCCGCTTTAACAATCATCCCGTGC
TGAATGATCGCTATCTTCTGTTGATGCTCCTGGGCAAGGGCGGCTTCTCA
GAGGTCCACAAGGCCTTCGACCTGAAGGAGCAACGCTATGTCGCATGTAA
GGTGCACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTATA
TCAAACACGCTTTGCGGGAATACAACATTCACAAGGCACTGGATCATCCG
CGGGTCGTCAAGCTATACGATGTCTTCGAGATCGATGCGAATTCCTTTTG
CACAGTGCTCGAATACTGTGATGGCCACGATCTGGACTTCTATTTGAAGC
AACATAAGACTATACCCGAGCGTGAAGCGCGCTCGATAATAATGCAGGTT
GTATCTGCACTCAAGTATCTAAATGAGATTAAGCCTCCAGTTATCCACTA
CGATCTGAAGCCCGGCAACATTCTGCTTACCGAGGGCAACGTCTGCGGCG
AGATTAAGATCACCGACTTCGGTCTGTCAAAGGTGATGGACGACGAGAAT
TACAATCCCGATCACGGCATGGATCTGACCTCTCAGGGGGCGGGAACCTA
CTGGTATCTGCCACCCGAGTGCTTTGTCGTGGGCAAAAATCCGCCGAAAA
TCTCCTCCAAAGTGGACGTATGGAGTGTGGGTGTTATCTTCTACCAGTGT
CTGTACGGCAAAAAGCCCTTCGGTCACAATCAGTCGCAGGCCACGATTCT
CGAGGAGAATACGATCCTGAAGGCCACCGAAGTGCAGTTCTCCAACAAGC
CAACCGTTTCTAACGAGGCCAAGAGTTTCATTCGGGGATGCTTGGCCTAT
CGCAAGGAGGATCGCATGGATGTGTTCGCACTGGCCAGGCACGAGTACAT
TCAGCCACCGATACCGAAACATGGGCGCGGTTCGCTCAATCAGCAACAGC
AGGCGCAACAACAGCAGCAGCAACAACAGCAACAGCAGCAGCAACAGTCG
TCGACGTCACAGGCCAATTCTACAGGCCAGACATCTTTCTCTGCCCACAT
GTTTGGCAATATGAATCAGTCGAGTTCGTCCTAGAAGCTTTCTAGACCAT
BS23987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tlk-RE | 3768 | CG34412-PE | 1..3768 | 17..3784 | 18810 | 99.9 | Plus |
| tlk-RC | 3765 | CG34412-PC | 34..3765 | 53..3784 | 18630 | 99.9 | Plus |
| tlk-RJ | 3801 | CG34412-PJ | 72..3801 | 55..3784 | 18620 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tlk-RE | 5537 | CG34412-RE | 193..3964 | 13..3784 | 18815 | 99.9 | Plus |
| tlk-RC | 5849 | CG34412-RC | 545..4276 | 53..3784 | 18630 | 99.9 | Plus |
| tlk-RI | 4673 | CG34412-RI | 377..4108 | 53..3784 | 18630 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3781653..3783560 | 54..1961 | 9510 | 99.9 | Plus |
| X | 23542271 | X | 3783674..3784441 | 1958..2725 | 3840 | 100 | Plus |
| X | 23542271 | X | 3786142..3786404 | 3522..3784 | 1315 | 100 | Plus |
| X | 23542271 | X | 3785593..3785813 | 3303..3523 | 1105 | 100 | Plus |
| X | 23542271 | X | 3785287..3785497 | 3095..3305 | 1055 | 100 | Plus |
| X | 23542271 | X | 3785028..3785226 | 2901..3099 | 980 | 99.5 | Plus |
| X | 23542271 | X | 3784524..3784706 | 2722..2904 | 915 | 100 | Plus |
| X | 23542271 | X | 3724829..3724871 | 13..55 | 200 | 97.7 | Plus |
Blast to na_te.dros performed 2014-11-26 15:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2545 | 110..339 | 465 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2576..2988 | 105..521 | 390 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6951 | 110..336 | 387 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7016 | 110..371 | 375 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2781 | 110..521 | 367 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..7200 | 110..519 | 306 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2547..2857 | 1211..1530 | 290 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6967 | 1294..1534 | 230 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7028 | 1179..1475 | 226 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..7112 | 110..359 | 218 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6817 | 1250..1339 | 205 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2532 | 1252..1494 | 202 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2549 | 1249..1461 | 194 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6932 | 1255..1481 | 187 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2538 | 1250..1475 | 178 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2403..2664 | 1250..1497 | 176 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..7041 | 1249..1514 | 168 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2999 | 1250..1468 | 161 | 58.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7127..7396 | 1231..1496 | 154 | 54.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8561..8831 | 1213..1479 | 150 | 54.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1146 | 1250..1338 | 149 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6828 | 1250..1338 | 144 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2496 | 1433..1475 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1546 | 1294..1338 | 135 | 77.8 | Plus |
BS23987.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:53 Download gff for
BS23987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RE | 197..3964 | 17..3784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:54 Download gff for
BS23987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RE | 197..3964 | 17..3784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:24 Download gff for
BS23987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RE | 197..3964 | 17..3784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:24 Download gff for
BS23987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3724833..3724871 | 17..55 | 100 | -> | Plus |
| X | 3781655..3783559 | 56..1960 | 99 | -> | Plus |
| X | 3783677..3784441 | 1961..2725 | 100 | -> | Plus |
| X | 3784528..3784706 | 2726..2904 | 100 | -> | Plus |
| X | 3785032..3785224 | 2905..3097 | 100 | -> | Plus |
| X | 3785290..3785495 | 3098..3303 | 100 | -> | Plus |
| X | 3785594..3785813 | 3304..3523 | 100 | -> | Plus |
| X | 3786144..3786404 | 3524..3784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:54 Download gff for
BS23987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3618866..3618904 | 17..55 | 100 | -> | Plus |
| arm_X | 3675688..3677592 | 56..1960 | 99 | -> | Plus |
| arm_X | 3677710..3678474 | 1961..2725 | 100 | -> | Plus |
| arm_X | 3678561..3678739 | 2726..2904 | 100 | -> | Plus |
| arm_X | 3679065..3679257 | 2905..3097 | 100 | -> | Plus |
| arm_X | 3679323..3679528 | 3098..3303 | 100 | -> | Plus |
| arm_X | 3679627..3679846 | 3304..3523 | 100 | -> | Plus |
| arm_X | 3680177..3680437 | 3524..3784 | 100 | | Plus |
BS23987.pep Sequence
Translation from 16 to 3783
> BS23987.pep
MPVVKQRKMSRFKMSPGAHLQMSPQNTSSLSQHHPHQQQQLQPPQQQQQH
FPNHHSAQQQSQQQQQQEQQNPQQQAQQQQQILPHQHLQHLHKHPHQLQL
HQQQQQQLHQQQQQHFHQQSLQGLHQGSSNPDSNMSTGSSHSEKDVNDML
SGGAATPGAAAAAIQQQHPAFAPTLGMQQPPPPPPQHSNNGGEMGYLSAG
TTTTTSVLTVGKPRTPAERKRKRKMPPCATSADEAGSGGGSGGAGATVVN
NSSLKGKSLAFRDMPKVNMSLNLGDRLGGSAGSGVGAGGAGSGGGGAGSG
SGSGGGKSARLMLPVSDNKKINDYFNKQQTGVGVGVPGGAGGNTAGLRGS
HTGGGSKSPSSAQQQQTAAQQQGSGVATGGSAGGSAGNQVQVQTSSAYAL
YPPASPQTQTSQQQQQQQPGSDFHYVNSSKAQQQQQRQQQQTSNQMVPPH
VVVGLGGHPLSLASIQQQTPLSQQQQQQQQQQQQQQLGPPTTSTASVVPT
HPHQLGSLGVVGMVGVGVGVGVGVNVGVGPPLPPPPPMAMPAAIITYSKA
TQTEVSLHELQEREAEHESGKVKLDEMTRLSDEQKSQIVGNQKTIDQHKC
HIAKCIDVVKKLLKEKSSIEKKEARQKCMQNRLRLGQFVTQRVGATFQEN
WTDGYAFQELSRRQEEITAEREEIDRQKKQLMKKRPAESGRKRNNNSNQN
NQQQQQQQHQQQQQQQNSNSNDSTQLTSGVVTGPGSDRVSVSVDSGLGGN
NAGAIGGGTVGGGVGGGGVGGGGVGGGGGRGLSRSNSTQANQAQLLHNGG
GGSGGNVGNSGGVGDRLSDRGGGGGGIGGNDSGSCSDSGTFLKPDPVSGA
YTAQEYYEYDEILKLRQNALKKEDADLQLEMEKLERERNLHIRELKRILN
EDQSRFNNHPVLNDRYLLLMLLGKGGFSEVHKAFDLKEQRYVACKVHQLN
KDWKEDKKANYIKHALREYNIHKALDHPRVVKLYDVFEIDANSFCTVLEY
CDGHDLDFYLKQHKTIPEREARSIIMQVVSALKYLNEIKPPVIHYDLKPG
NILLTEGNVCGEIKITDFGLSKVMDDENYNPDHGMDLTSQGAGTYWYLPP
ECFVVGKNPPKISSKVDVWSVGVIFYQCLYGKKPFGHNQSQATILEENTI
LKATEVQFSNKPTVSNEAKSFIRGCLAYRKEDRMDVFALARHEYIQPPIP
KHGRGSLNQQQQAQQQQQQQQQQQQQQSSTSQANSTGQTSFSAHMFGNMN
QSSSS*
BS23987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tlk-PE | 1255 | CG34412-PE | 1..1255 | 1..1255 | 6582 | 100 | Plus |
| tlk-PC | 1254 | CG32782-PC | 4..1254 | 6..1255 | 6526 | 99.6 | Plus |
| tlk-PJ | 1266 | CG34412-PJ | 17..1266 | 6..1255 | 6521 | 99.4 | Plus |
| tlk-PH | 1266 | CG34412-PH | 17..1266 | 6..1255 | 6521 | 99.4 | Plus |
| tlk-PF | 1266 | CG34412-PF | 17..1266 | 6..1255 | 6521 | 99.4 | Plus |
