BS23989.complete Sequence
1511 bp assembled on 2011-02-03
GenBank Submission: KX805755
> BS23989.complete
GAAGTTATCAGTCGACATGCCAGGATTGTGCATTGGAATCCTTCTGCTCA
TTGGTTTTGGATGCACCACTGCCTACAAGATCCCCACACCGACTGTGGAG
CTCCTTGAGACTGGATTTAGCGTTTCCATACCGGATGAAGAGGGCGTAAA
AGTGGTGGCCTTTAATGTAAATCGCAATCGGAATTTCACATCCTTCATAA
ACGAGGGACAGTACAATGTGAGATTGACTGAACCCCAGAACGGCAGGTGG
ACGACCAACTTCAGTTCGGTTCCCTTGAGATCCCAAGATGTTCTATACCT
TTGGACAAGTGTGCAGCACCAAAAGGCTGTGTATCAAGATCTGGCGCAGC
CCCTGCCAGTCTGCAATCTCGGCGGAGAGTATCGGCCCAGGGGATGTTCG
CCCGGTGATGATGACTTTACGGATGACAACCAGCTAAGTACTGAGGACAG
TGCTTTGGAACCCACCGCTCCCTCCGTCTGTGAACCTTCTGAAAGCCAGG
TTTCGCCGCAAATCGGTGTTTCCATATGTAAGGGACAACTTTTGTTTGAG
GAGACTTTTGATCAGCTGAATGAATCTCTGTGGATACATGATGTTCGCCT
GCCCCTCGACTCCAAGGATGCAGAGTTCGTCTTGTACGACGGGAAGGCCA
AAGTTCACGATGGCAACCTGGTGATTGAGCCGCTTCTTTGGTCCAGCTAT
CGCCCGGATCTCTCCATAGCCAACTCCAGGCTCGATCTATCGGAGCGTTG
TACTGGAACCCATAACAGAATTAAGGAATGCATCCTGCATTCCACGGGCA
GTGGACCCAGTGGGATAATGCCCCCAATTGTAACACCTCGAATCAGCACC
AAGGAAACCTTTGCCTTTCAATACGGACGCATTGAGATCCGTGCCAAGCT
ACCAAAGGGAGATTGGATAGTACCACTCCTACTACTCGAACCCCTCACCG
AATGGTACGGGCAATCGGGCTACGAATCCGGCCAGCTGCGAGTGGCCTTG
GCCAGGGGTAACTCCGTGCTGAGGATGCCGCGCGGAAAGCTTGTAGATGG
TAGATCCCTATACGGAGGACCCGTACTCTCCACGGATGCCCACCAAAGGG
AGGACTTATGGCTGAGCAAGCGAAAGATATCCCATTTCGGCGATGACTTT
CACACCTACAGCTTGGATTGGAGCAGCAATAGGCTGCTCTTCTCCGTAGA
TGGTCAGGTCTATGGAGAGATGCTGAATGGTTTCACTGAACTGGACGAGA
ATCCCAGGTGGAAGCAGGGCGGTCCCATGGCCCCGTTCGATAAAATGTTT
TACATTTCGTTGGGCGTCTCTGTGGGCGGATTTGGTGACTTTGTGGACCA
TCTTCGCACCGCCACTTATGAGAAGCCTTGGGCCAACTATCATCCCCAGG
CGAAGCTGCAGTTCCACCAGGCCCAAGACCAGTGGCTACCCACATGGAAA
CAGCCGGCCTTGAAGATCGATTATGTTCGTGTCTTCGCCAACTGAAAGCT
TTCTAGACCAT
BS23989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP1-RA | 1479 | CG6895-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP1-RA | 1785 | CG6895-RA | 207..1685 | 17..1495 | 7395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18676295..18677083 | 134..922 | 3945 | 100 | Plus |
| 3L | 28110227 | 3L | 18677145..18677522 | 920..1297 | 1890 | 100 | Plus |
| 3L | 28110227 | 3L | 18677578..18677776 | 1297..1495 | 995 | 100 | Plus |
| 3L | 28110227 | 3L | 18676006..18676123 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:06:46 has no hits.
BS23989.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-03 10:47:23 Download gff for
BS23989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP1-RA | 194..1671 | 17..1494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:08 Download gff for
BS23989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP1-RA | 207..1684 | 17..1494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:34 Download gff for
BS23989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP1-RA | 207..1684 | 17..1494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:34 Download gff for
BS23989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18676006..18676123 | 17..134 | 100 | -> | Plus |
| 3L | 18676296..18677080 | 135..919 | 100 | -> | Plus |
| 3L | 18677145..18677522 | 920..1297 | 100 | -> | Plus |
| 3L | 18677579..18677775 | 1298..1494 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:08 Download gff for
BS23989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18669106..18669223 | 17..134 | 100 | -> | Plus |
| arm_3L | 18669396..18670180 | 135..919 | 100 | -> | Plus |
| arm_3L | 18670245..18670622 | 920..1297 | 100 | -> | Plus |
| arm_3L | 18670679..18670875 | 1298..1494 | 100 | | Plus |
BS23989.pep Sequence
Translation from 16 to 1494
> BS23989.pep
MPGLCIGILLLIGFGCTTAYKIPTPTVELLETGFSVSIPDEEGVKVVAFN
VNRNRNFTSFINEGQYNVRLTEPQNGRWTTNFSSVPLRSQDVLYLWTSVQ
HQKAVYQDLAQPLPVCNLGGEYRPRGCSPGDDDFTDDNQLSTEDSALEPT
APSVCEPSESQVSPQIGVSICKGQLLFEETFDQLNESLWIHDVRLPLDSK
DAEFVLYDGKAKVHDGNLVIEPLLWSSYRPDLSIANSRLDLSERCTGTHN
RIKECILHSTGSGPSGIMPPIVTPRISTKETFAFQYGRIEIRAKLPKGDW
IVPLLLLEPLTEWYGQSGYESGQLRVALARGNSVLRMPRGKLVDGRSLYG
GPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDGQVYG
EMLNGFTELDENPRWKQGGPMAPFDKMFYISLGVSVGGFGDFVDHLRTAT
YEKPWANYHPQAKLQFHQAQDQWLPTWKQPALKIDYVRVFAN*
BS23989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP1-PA | 492 | CG6895-PA | 1..492 | 1..492 | 2643 | 100 | Plus |
| GNBP2-PB | 461 | CG4144-PB | 9..460 | 8..491 | 580 | 32.5 | Plus |
| GNBP2-PA | 432 | CG4144-PA | 2..431 | 29..491 | 559 | 32.6 | Plus |
| GNBP2-PD | 410 | CG4144-PD | 15..409 | 70..491 | 529 | 33.1 | Plus |
| GNBP3-PA | 490 | CG5008-PA | 13..489 | 5..491 | 478 | 29.5 | Plus |
