BS23991.complete Sequence
2630 bp assembled on 2011-07-18
GenBank Submission: KX805237
> BS23991.complete
GAAGTTATCAGTCGACATGTATTATCCGCACATGGTGCAGGCGGGCGTAG
CGCCTTTTCCGGGCGCTCCGGCCGGCTATGCCGCCGCACCGAATCCTGGA
GCAGCGGTTGTTGCCGCAGCGGCCGCCGCCCAACAACAGCAGCAGCAGCA
GCAGCAACAACAACAGCAGCAGCAGCAGGCCCAGCAGCAACAGCAACAAC
AGGTGGCCGGAGGACCACCCAGCGCCGCGGACAGTTTGTCCATGGCGGTG
GCAGCGGCAGCGGCCAAACAGTCTGCTGATCCAGTGACCCAAATGAAATC
GGGCAGCGAGGCCGCAGGATCTGGCAACAGCAATAACAACAACACAGCTG
GTGCGGGAACAGGAGCGCCAGGCGCAGCCGGAGGATTGACCACAGAATAT
TCAAGTGGCGGCTGTGGGGGCGGTGGTGCATCAACGGCCAATTCGGTGGT
GGTGGCCACCAGTGTTTCCGACGTTGTCAATGCCTCGCTGTACATGCAAC
AGAAGTCCACAGTATTGATCGCCAATGAGGCAGCAGAATCACAACAGAGC
TCCGCCATGCAAAATGCCGGCGGCGGTGGAAATACTGGCGGCGGCGGCGG
CGGAGGAGGCGGCGGCACTCCCAGTTCTCCGCTCAGCAACTCCCCGTCCA
GCGCAACAGCCTCGCAGGCGGGCGGATGCGGACTGACCCTCAATGGCAGC
GCCACCGAGGGCAGCATGTCCGGTGATACATCGCCGGTGGCCAGTGGTGA
ACCGCTCCTGCAGACGCCGCCCGCCCACCAACAGCAGCAACAGCAACAAC
AGCCGCTCCTGTGCAGCAGTCCCACGTCGATGCAATCGTCGGGCACCTCC
GTGACGGGCAGTTCGATAGCTTCCGGCACATTGGCGGCCACCAGCAGCAG
TGGCGTTGGACTTTTGCCCACCACCGGATTGGACAGCATTGCCAATGGTG
GTGCACCAACAGGCTGTGCCGTTGTGCCGGCCAGCACATCGCAGGTGATC
GCCCACCTGAATGCAGCTGCCGCTGCGGCCAGCGGCATCGTGTCGCCCAG
CGCCAATGTGGCCACTAGTCTCAGCAGCGCCCTAGTCCCGGCCCAATCGG
TTGCCGCCGTTGCGGCCGCCTCCCTCGATGCCAAAAGTCAGCCGAAACGG
CTGCACGTCTCCAACATACCGTTCCGCTTCCGGGATCCCGATCTGAGAGC
CATGTTTGGGCAATTTGGCACCATTCTGGACGTGGAAATCATCTTCAACG
AACGCGGCAGCAAGGGATTCGGTTTTGTAACATTCGCTAACAGCAACGAT
GCAGAACGAGCACGCGAACGTCTACACGGCACCGTGGTTGAGGGACGCAA
AATCGAGGTGAATAACGCCACTGCACGTGTACAAACCAAAAAAGTGACAG
CAGTACCCAACGTTTGCGTACAATGGCCAGAAGCCGCCGTTGCCGCCGCA
ATGCGTGGAGTGGCCATCCAGCGCGGACACGTGGGCGTGGTCGGCGCCAC
CCCCTACCATCATCCCCATCATCCGCATCATCATCCGGCGCTGCTGGCGG
CCTCCGCCGCCGCTGCCCAACAACAACAGCAACGCCAACTGGCCGCCGCC
GCCGTGGCCACGGCAGCAGTCGCCCAACAGCAGCAGCAGCAGCAGCAGGC
TGTTGTACAGCAGCAACAGCAGCAAGTGGCTGCCGCCGCCCAGCAGCAAC
ACCAGCAGCAGCAGCAGCAGCAACAACAGGCCGTGCAGCAACAACAGGCG
GTCCAGCAGCAGCAGCAACATCAACAACAACAGCAGCAGCAGCAACAACA
GCAACATGCCGCCGTAGCAGCCGCCGCAGCTGCCGCTTCGCATCCGCACA
TGCATGCCGCTCATGCCCATGCCCATGCCCACGCCCTTGGTCCACAATTG
GCGCAACTGCAAGCGGTCGCCGTGCCCACGGCCGCTAGCAATGCTGCTGC
ACTGCAGCAATCCCTCGCCGCTGCCATCCAGAATCCGAGCGGTAATCCGA
ACGCTGCTGCCGCCGCCGCCGCCTATGCCGCCCGTCTATCGGCGGCCACG
GGTGCCACACAATCGCCGCAAACAGCCGCTGCTGCTGCGGCTGCTGCTTC
CATGGCTGCGTCGGCCAATGCGGCCAACAATGCGGCCGCTTTGCATGGAT
TCGCGCCTGTATACTATGATCCCTTCTTAGCAGCCGCTGCTTCCGCTGAT
CCAAATCTACGCTTCCAGGCAGCCAAACCGGTCACTGAAGTTCCAGCCGC
TCAGCCAGCCGCCATATTAAATCGCCGCACTGTGACTACGCTAAACAGTA
ACCCACATACGATCAACCGCATTCCGGTTCCACAGAATGTTTTGGCCACT
GCTCCGCTGCTAAAGACTCCGCTGTCTCAGGCCCAGCAGCAGGCGTACGC
CACGGCGGCCACCACCTACACGGCGGTAGCCGCCCGGGCCGCCTATGGCG
CCGCTGCTGCAGCAGCCGCCCAGCCGGCACTCGCCGGCTACGCCACCGTG
GCTGGATATGCGCGCGAATATGCAGATCCTTATCTAGGACATGGCATTGG
ACCAGTTCCTGGATACGGGGCTACCATGTACCGCGGTGGATTCAATCGTT
TCACGCCATATTAAAAGCTTTCTAGACCAT
BS23991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| A2bp1-RE | 2598 | CG32062-PE | 1..2598 | 17..2614 | 12990 | 100 | Plus |
| A2bp1-RL | 2577 | CG32062-PL | 63..2307 | 28..2272 | 11225 | 100 | Plus |
| A2bp1-RF | 2292 | CG32062-PF | 1..2202 | 17..2218 | 11010 | 100 | Plus |
| A2bp1-RL | 2577 | CG32062-PL | 2308..2577 | 2345..2614 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| A2bp1-RE | 3508 | CG32062-RE | 509..3106 | 17..2614 | 12990 | 100 | Plus |
| A2bp1-RL | 3944 | CG32062-RL | 1028..3272 | 28..2272 | 11225 | 100 | Plus |
| A2bp1-RF | 3413 | CG32062-RF | 494..2695 | 17..2218 | 11010 | 100 | Plus |
| A2bp1-RL | 3944 | CG32062-RL | 3273..3542 | 2345..2614 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10584814..10585539 | 1432..2157 | 3630 | 100 | Plus |
| 3L | 28110227 | 3L | 10573448..10574154 | 504..1210 | 3535 | 100 | Plus |
| 3L | 28110227 | 3L | 10568128..10568605 | 28..505 | 2390 | 100 | Plus |
| 3L | 28110227 | 3L | 10589355..10589516 | 2344..2505 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 10575317..10575414 | 1263..1360 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 10588653..10588732 | 2266..2345 | 370 | 97.5 | Plus |
| 3L | 28110227 | 3L | 10590326..10590391 | 2505..2570 | 330 | 100 | Plus |
| 3L | 28110227 | 3L | 10587627..10587688 | 2158..2219 | 310 | 100 | Plus |
| 3L | 28110227 | 3L | 10587836..10587896 | 2212..2272 | 290 | 98.4 | Plus |
| 3L | 28110227 | 3L | 10576419..10576475 | 1356..1412 | 285 | 100 | Plus |
| 3L | 28110227 | 3L | 10574434..10574489 | 1210..1265 | 280 | 100 | Plus |
| 3L | 28110227 | 3L | 10590520..10590565 | 2569..2614 | 230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6971 | 1562..1820 | 392 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7005 | 1521..1806 | 348 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2363 | 775..819 | 146 | 82.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6571..6624 | 752..806 | 137 | 74.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8027..8080 | 752..806 | 137 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6934 | 750..837 | 134 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6817 | 750..819 | 134 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6870 | 750..824 | 134 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2867 | 779..835 | 129 | 74.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6761 | 776..806 | 128 | 90.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6782 | 776..806 | 128 | 90.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2445 | 750..846 | 127 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1584 | 750..806 | 123 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2655 | 750..806 | 123 | 68.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1101 | 775..818 | 123 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6836 | 776..806 | 119 | 87.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1028 | 776..824 | 116 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 775..806 | 115 | 84.4 | Plus |
BS23991.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 16:37:07 Download gff for
BS23991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A2bp1-RE | 494..3089 | 17..2612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:06 Download gff for
BS23991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A2bp1-RE | 509..3104 | 17..2612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:47 Download gff for
BS23991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A2bp1-RE | 509..3104 | 17..2612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:47 Download gff for
BS23991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10587627..10587687 | 2158..2218 | 100 | -> | Plus |
| 3L | 10587843..10587896 | 2219..2272 | 100 | -> | Plus |
| 3L | 10588660..10588731 | 2273..2344 | 100 | -> | Plus |
| 3L | 10589356..10589516 | 2345..2505 | 100 | -> | Plus |
| 3L | 10590327..10590390 | 2506..2569 | 100 | -> | Plus |
| 3L | 10590521..10590563 | 2570..2612 | 100 | | Plus |
| 3L | 10568128..10568605 | 28..505 | 100 | -> | Plus |
| 3L | 10573450..10574154 | 506..1210 | 100 | -> | Plus |
| 3L | 10574435..10574488 | 1211..1264 | 100 | -> | Plus |
| 3L | 10575319..10575411 | 1265..1357 | 100 | -> | Plus |
| 3L | 10576421..10576475 | 1358..1412 | 100 | -> | Plus |
| 3L | 10580309..10580329 | 1413..1433 | 100 | -> | Plus |
| 3L | 10584816..10585539 | 1434..2157 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:06 Download gff for
BS23991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10580727..10580787 | 2158..2218 | 100 | -> | Plus |
| arm_3L | 10580943..10580996 | 2219..2272 | 100 | -> | Plus |
| arm_3L | 10581760..10581831 | 2273..2344 | 100 | -> | Plus |
| arm_3L | 10582456..10582616 | 2345..2505 | 100 | -> | Plus |
| arm_3L | 10583427..10583490 | 2506..2569 | 100 | -> | Plus |
| arm_3L | 10583621..10583663 | 2570..2612 | 100 | | Plus |
| arm_3L | 10561228..10561705 | 28..505 | 100 | -> | Plus |
| arm_3L | 10566550..10567254 | 506..1210 | 100 | -> | Plus |
| arm_3L | 10567535..10567588 | 1211..1264 | 100 | -> | Plus |
| arm_3L | 10568419..10568511 | 1265..1357 | 100 | -> | Plus |
| arm_3L | 10569521..10569575 | 1358..1412 | 100 | -> | Plus |
| arm_3L | 10573409..10573429 | 1413..1433 | 100 | -> | Plus |
| arm_3L | 10577916..10578639 | 1434..2157 | 100 | -> | Plus |
BS23991.pep Sequence
Translation from 16 to 2613
> BS23991.pep
MYYPHMVQAGVAPFPGAPAGYAAAPNPGAAVVAAAAAAQQQQQQQQQQQQ
QQQQAQQQQQQQVAGGPPSAADSLSMAVAAAAAKQSADPVTQMKSGSEAA
GSGNSNNNNTAGAGTGAPGAAGGLTTEYSSGGCGGGGASTANSVVVATSV
SDVVNASLYMQQKSTVLIANEAAESQQSSAMQNAGGGGNTGGGGGGGGGG
TPSSPLSNSPSSATASQAGGCGLTLNGSATEGSMSGDTSPVASGEPLLQT
PPAHQQQQQQQQPLLCSSPTSMQSSGTSVTGSSIASGTLAATSSSGVGLL
PTTGLDSIANGGAPTGCAVVPASTSQVIAHLNAAAAAASGIVSPSANVAT
SLSSALVPAQSVAAVAAASLDAKSQPKRLHVSNIPFRFRDPDLRAMFGQF
GTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNN
ATARVQTKKVTAVPNVCVQWPEAAVAAAMRGVAIQRGHVGVVGATPYHHP
HHPHHHPALLAASAAAAQQQQQRQLAAAAVATAAVAQQQQQQQQAVVQQQ
QQQVAAAAQQQHQQQQQQQQQAVQQQQAVQQQQQHQQQQQQQQQQQHAAV
AAAAAAASHPHMHAAHAHAHAHALGPQLAQLQAVAVPTAASNAAALQQSL
AAAIQNPSGNPNAAAAAAAYAARLSAATGATQSPQTAAAAAAAASMAASA
NAANNAAALHGFAPVYYDPFLAAAASADPNLRFQAAKPVTEVPAAQPAAI
LNRRTVTTLNSNPHTINRIPVPQNVLATAPLLKTPLSQAQQQAYATAATT
YTAVAARAAYGAAAAAAAQPALAGYATVAGYAREYADPYLGHGIGPVPGY
GATMYRGGFNRFTPY*
BS23991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| A2bp1-PE | 865 | CG32062-PE | 1..865 | 1..865 | 4329 | 100 | Plus |
| A2bp1-PL | 858 | CG32062-PL | 22..858 | 5..865 | 4143 | 97.2 | Plus |
| A2bp1-PH | 962 | CG32062-PH | 22..962 | 5..865 | 3657 | 82.1 | Plus |
| A2bp1-PF | 763 | CG32062-PF | 1..734 | 1..734 | 3657 | 100 | Plus |
| A2bp1-PK | 921 | CG32062-PK | 1..921 | 1..865 | 3523 | 79.7 | Plus |
