BS23992.complete Sequence
3602 bp assembled on 2011-02-18
GenBank Submission: KX802852
> BS23992.complete
GAAGTTATCAGTCGACATGTCGAATTCTGTGGAAGAGTGCAAGGATGAGG
ACCTGCCGGCAAACACGCTGGAGCACTTCACCGAACTGCAGCAGGTGCTG
GAGATGATCGACAACATCAAATCCATTGCCGCTAACACCTTCGAAAGGGA
GTTCGAGCAGTACGCCCAGGTTTTGTCTAGATATCAGGAGCAGCCACACC
TCTTGGATCCACATTTGGAGGAGTTACTCGGCAAACTGCTCCACAAGATT
CGGAAGCCAGATCTAGACACTGGAGAGCTTCATGCAGCCTTCAAGTATCT
CTACATCATCTGCAAAGTGCGCACCTATAAGGTCCTGGTAAAGTTTATGC
CACACGAACTGAGCGATCTGGAGTTTGTTCTGGATTTGCTGGGTCAGCAA
AATCCCAAGGAGTTCGAACAGTGGGAAACGCGCTATATACTGCTCCTGTG
GATGTCTATCCTGGTCCTAAATCCCTTTCACATGTCGAGACTAGATGCCT
ATGACACCTCCACATCTGCTCCCACCACCAATTGCAGTCCCGTGAACCAT
GTTCAGTCGAAGAACACCAAGATGGATCGCATCTTCGAGCTCATCCAGCT
TTATGTGTCCTCCAACGACACATGCAGCAGCATGGCTGCTTTCCTGGCCG
CCAAGTATTTCATTCGCAGTGACATCAAGGATCTATATCTGGAGCGCTTC
CTGGACTGGATTATGGAGCAGCACCAAGCGGACACGTTGAACGTCAAGTT
CGGCCAACTGGCTGCAGTGGCTGCTATTTTAAAGCACGGAAAGCGAGAAG
ATCTTCTGCCCTATGCGGACAAACTTCTTCAGTGGATCACTTCCTGTCAG
TACAAGGATGACAACGACTTTCTCAAGTACAAGAACTATGTAAAAATCAT
CCAGAGAATTGGATTGGTTCATTTGAAGCCACGCATTGCCAGCTGGCGGT
ATAAAAGAGGCACTCGTTCACTGGCCACCAATCTAAACCAGACAACTGCG
GCAGGAGGTGAACCAGTTGTTTTGGAGCAATCCCTGGAGGAAGGCGAGGA
AATAGTGGTCCCCGATGCCATAGAAGAGGTGATTGAGGAGCTGCTCCAGG
CACTGCGAAGCGGAGGAAACGATATACGCTGGAGCGCCGCCAAAGGATTA
GGCAGAGTCACCAATCGCCTTCCCAAGGAGCTGGCCGATGAGGTTATAGG
GTCTGTGATTGATATACTCAACCCGCTGGAACCCCACGAGGCCTGGCATG
GTGCATGCCTGGCTTTGGCAGAACTGGCAAAAAGGGGATTGCTGCTGCCA
CATCGATTGGAGGAGCTAGTACCCCTCCTTATGCAGGCGCTCTTCTACGA
CGAGATGAAGGGCTACATGTCGGTGGGGCAACACATCCGAGATTCAGCCT
GCTACATGTGCTGGGCATTTGCCAGGGCTTACAATCCGGATGATGTGAAG
CCATTTGTGCACAAAATCTCATCTGGCCTGCTGACCGTTGCAGTGTTCGA
CCGCGAGGTGAACTGCAGGCGGGCTGCCTCGGCAGCTTTTCAGGAAAGTG
TGGGACGCCTGGGCAACTTTCCCTTCGGAATCGAAATCTCCACCACGACG
GACTTCTATTCCGTGGGCATCAGGCAGAATTCCTATCTAAACATCAGTGA
CTACATTGCACAGTTTGAGGTGTACAGGGAACCATTGATTAACCATCTAG
TTCAGCATAAGGTAAGCCATTGGGATTCGGCTATAAGGGAGCTGACAGCC
AAAGCCCTGCACAAACTATCCCTTTGGGAGCCCGAGTACATGGCCGCTGT
GGTGCTGCCGCAACTGCTGGCAAAAACTGACACCATCGATATTAACTGCC
GGCATGGTTGTGTCTTAGCCATGGGAGAAATAACACTGACCCTACGGAAA
CTAGAGGAAAAGAGTGATCCCCAAGTGGTTTACCTCTCCAACCAACGGGT
TGCGGAGCTGAATGAACTAATAATAACGTTCCTAGACAAAAATTTCTATC
GCGGAATGAGCGGCGACCTGATGAAATCTTGCACCAGCAGCTACATAAAG
AACTGCAGTCTGGCCAAGTTGCAGGCTACGCCGGAGTGCTTGGTTTCCTG
GCAGAAAGTCATCGATTCCTGTTTGATCACCAAATCAAACGCTATTCGGG
ATGGTGCGGTGGAAGCGTTCGGTGAACTCTGTACCACTTATTACTGCTCA
GATTCCAGGCACGGGGAAAACGAAGCCATAATCAACACTTATCTAACAGG
TGCAGATAACGATTTGGAGGAGCACATTCGCATGGGCTACATTGCTGCTC
TGGGTGTGCTCCCATCCTTTATGATCCGCTGTCATCTGCAGGCTATATTG
GACAGTCTGGTGAAGCACTCCCTAACTCCACTGCAAGCAGTTCTGGTGGG
TGAAATGGGTGACCGCGAGAACATCCAGGCATACAGGTGGAGCGAGGCAC
GGACACAGAGCGTGCTGGCCTTGACCAAGTTGGTGAAGACCGTGGGATAT
GGAGGGGGAATTGACTCATTTGCTGAGCCGAAAAACTTTAACAAGGTTAT
CGAATGCCTGTTAAGAGCTCTTCAAGAGTACACCCTGGACAACCGTGGTG
ACATCGGAGCGTGGGTGAGGGAGGCGGCTATGTCATCGCTATACGAAATC
GTCACTACGTGTCCGCCTGATCTCCTCGCCCCAGAGCAAGTGCATGAGAT
TGTCGTGGGCTTTATGCAACAGGCGGTGGAGAAGATCGATCGCACTCGTG
GATTAGGTGGTCGCCTTTGCTGCCAACTGATCCATCATCAGCCGAGGATC
CCCTACATACGGGAGCACTCAAAACTCTTGGAAATATTTCCCGCGGATGC
GGATTCCGTACTTTGGTTATTTGCCGATCACACATTCCCGCTGTTCTGCG
AGCTGCTCTCTCTGCCGGATTACTCTAAAAGAGTTCTTTTGGGTCTGAGT
GCCAGCATTGGTCAACTGACTGAATCTCTTATCAAGTATGCCTCCAGTGC
CTTATTCCACTTCTTGCGTTCCAATCCTGAGACTGTTCCGCGTCTCTGCT
CCGAGGTGGTCCAGATTTTCGAGGAGCATCTACTAAACGAGCGCGTGACC
TATCCTCTGCTCAGTTTCCTGGATATACTCATTGGCTCCGGAACTGTAGA
ATCGGTTCTACACGATGAAGCAAATCCCTTTGCAGAGGATATCTTTAGGC
TGCTCAACCTGGAGGTTAAGGGCTACAAGAAGCTGTACAAGACTGCGACC
AGCATCAGTGCTTTTTGCCAGTTGCTCCAGGTTCCTCGCCTGTCTAAACG
CATCCTCTCCAAGCTCTCAGTATTTCTTGGACTGCAGCACGTCCACGTTC
GCAAAACCGCTGCCACAAAATTGTACGAAGCGTTGGCTCTGCACGGCGAT
GTCACCGAAGTGCCCGAGGAGAATATGGATGAGATCCTAACACTGCTCTC
CGAAACGGACTGGACCCAGCCGCTGGTGGAGGTGCGTCCGCTGCGGAACC
AGTTGTGCCAACTAATGGACATCAAGCCTCCCGTAAGTGGAGCAGCTGCT
GCAGCCGCTTTGCAGCAAGCGAGTGCTGATAAATGAAAGCTTTCTAGACC
AT
BS23992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7261-RA | 3570 | CG7261-PA | 1..3570 | 17..3586 | 17850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7261-RA | 3910 | CG7261-RA | 129..3700 | 16..3587 | 17860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2148645..2149780 | 958..2093 | 5680 | 100 | Plus |
| 2L | 23513712 | 2L | 2147646..2148590 | 16..960 | 4725 | 100 | Plus |
| 2L | 23513712 | 2L | 2150848..2151454 | 2981..3587 | 3035 | 100 | Plus |
| 2L | 23513712 | 2L | 2150328..2150795 | 2513..2980 | 2340 | 100 | Plus |
| 2L | 23513712 | 2L | 2149841..2150261 | 2093..2513 | 2105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:15:19 has no hits.
BS23992.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:32 Download gff for
BS23992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7261-RA | 129..3697 | 17..3585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:16 Download gff for
BS23992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7261-RA | 130..3698 | 17..3585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:14 Download gff for
BS23992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7261-RA | 130..3698 | 17..3585 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:14 Download gff for
BS23992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2147647..2148589 | 17..959 | 100 | -> | Plus |
| 2L | 2148647..2149780 | 960..2093 | 100 | -> | Plus |
| 2L | 2149842..2150261 | 2094..2513 | 100 | -> | Plus |
| 2L | 2150329..2150795 | 2514..2980 | 100 | -> | Plus |
| 2L | 2150848..2151452 | 2981..3585 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:16 Download gff for
BS23992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2147647..2148589 | 17..959 | 100 | -> | Plus |
| arm_2L | 2149842..2150261 | 2094..2513 | 100 | -> | Plus |
| arm_2L | 2148647..2149780 | 960..2093 | 100 | -> | Plus |
| arm_2L | 2150329..2150795 | 2514..2980 | 100 | -> | Plus |
| arm_2L | 2150848..2151452 | 2981..3585 | 100 | | Plus |
BS23992.pep Sequence
Translation from 16 to 3585
> BS23992.pep
MSNSVEECKDEDLPANTLEHFTELQQVLEMIDNIKSIAANTFEREFEQYA
QVLSRYQEQPHLLDPHLEELLGKLLHKIRKPDLDTGELHAAFKYLYIICK
VRTYKVLVKFMPHELSDLEFVLDLLGQQNPKEFEQWETRYILLLWMSILV
LNPFHMSRLDAYDTSTSAPTTNCSPVNHVQSKNTKMDRIFELIQLYVSSN
DTCSSMAAFLAAKYFIRSDIKDLYLERFLDWIMEQHQADTLNVKFGQLAA
VAAILKHGKREDLLPYADKLLQWITSCQYKDDNDFLKYKNYVKIIQRIGL
VHLKPRIASWRYKRGTRSLATNLNQTTAAGGEPVVLEQSLEEGEEIVVPD
AIEEVIEELLQALRSGGNDIRWSAAKGLGRVTNRLPKELADEVIGSVIDI
LNPLEPHEAWHGACLALAELAKRGLLLPHRLEELVPLLMQALFYDEMKGY
MSVGQHIRDSACYMCWAFARAYNPDDVKPFVHKISSGLLTVAVFDREVNC
RRAASAAFQESVGRLGNFPFGIEISTTTDFYSVGIRQNSYLNISDYIAQF
EVYREPLINHLVQHKVSHWDSAIRELTAKALHKLSLWEPEYMAAVVLPQL
LAKTDTIDINCRHGCVLAMGEITLTLRKLEEKSDPQVVYLSNQRVAELNE
LIITFLDKNFYRGMSGDLMKSCTSSYIKNCSLAKLQATPECLVSWQKVID
SCLITKSNAIRDGAVEAFGELCTTYYCSDSRHGENEAIINTYLTGADNDL
EEHIRMGYIAALGVLPSFMIRCHLQAILDSLVKHSLTPLQAVLVGEMGDR
ENIQAYRWSEARTQSVLALTKLVKTVGYGGGIDSFAEPKNFNKVIECLLR
ALQEYTLDNRGDIGAWVREAAMSSLYEIVTTCPPDLLAPEQVHEIVVGFM
QQAVEKIDRTRGLGGRLCCQLIHHQPRIPYIREHSKLLEIFPADADSVLW
LFADHTFPLFCELLSLPDYSKRVLLGLSASIGQLTESLIKYASSALFHFL
RSNPETVPRLCSEVVQIFEEHLLNERVTYPLLSFLDILIGSGTVESVLHD
EANPFAEDIFRLLNLEVKGYKKLYKTATSISAFCQLLQVPRLSKRILSKL
SVFLGLQHVHVRKTAATKLYEALALHGDVTEVPEENMDEILTLLSETDWT
QPLVEVRPLRNQLCQLMDIKPPVSGAAAAAALQQASADK*
BS23992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7261-PA | 1189 | CG7261-PA | 1..1189 | 1..1189 | 6146 | 100 | Plus |
