BS23993.complete Sequence
3074 bp assembled on 2012-04-25
GenBank Submission: KX803575
> BS23993.complete
GAAGTTATCAGTCGACATGGGTGAAGTAGCTGCCACAGTGGAGCCTCTGG
CCGCGGTCAAGTCGAAATCCATGCGATCCCGGAAGAGACGACAGCGTCGT
AGGCGACAAATAGCCTACCTGGCCATATGTGGATTAAGTGTAGCCATATT
CGGCTTCGCTTTGGCCACGCTGATCCGGCCCACAACCGCCCAGGCTGATG
CAGATCCCGGGAGCTGGCGCAAGGGATATGTGGGCCATGGCACCACGCAC
GAACAGCTTGGCCAGCCCCATTGGCCACCAGTCCAGTACACTGTATACCG
GCCGACAACCAACTACACAAAGGCACCACCACCTCCCACGTCCGCCATGA
ACCCCATTTTCAATTTTACACACTTTCTATATGACAAGGTTCTTTATAGG
GATGAACCCATTCCGGAGGGTTACATTGTCGTAAAGAATTCGGACACTTT
GAGCTTGGGTCCCAAAGTGGAGGAGAATGACTGGCGGGATCTATTGGCTC
ATTATTGGATGGTTCTCATCTGGGTTGTTATTCTCGTGGTGCTCATTATA
GTCATACCGTTCATTGCCGTTTGCTATTGCTGTTTCTGTTGCTGCCGACG
ATGTCGACAGGGATGTCCTCCGTGTACCAGTAAACAGGATGCTCAGCGGC
GCTTCTGTTGTGGCATCTGTCTGTTGATCCTCATCATCGGACTGATTTTT
GGCATCATTATCGCCTTTGTTACCAACAAAATGATTGACAGCGGCTTTGC
CGAGACTTCCGAGACAATGAAGCGCGGCAGCGAGGACACTTGCACTTATC
TGAAGGATGTAGCCGATCACGTTCACCATCTGATGATGTACAACTACGAG
GAGATGGAGACTCATGTGCTTGATCAATTAACCCACGCTCACCGGCACAT
ATTTTTGGATCTCTCCGACACATCGGAGAGTAATTCCTTGGCAGAAATGG
AGCGAGTTTTGGAGAACATGCCCGAGGCTCTGGAGCTGATGAGGCAAGTG
GAGAAGATGGAGAAAGATCTGCGCTTCTATGGCTCCCAATTAAGAGATGG
CGTCCGTGGCATTAAACGAGATGTCAACTTTGCAGTGGCCAATCTCTGTC
AACTGCAGATGTGCCAGAAGTTCCTGATTAGCAGCAATATCGAACACATT
GATTCCTCGCAATGCCTGCACTTCGACAACCTCCCGAACACCAAAGAATT
TGTAGAGGGAATGGAGAATATAGTTGCAAGTGAGTATTACGCTATACCTC
AACGGGGACTCTCGCGTCTAAAGAAGGTTAGCGACAAGGTGAAGACGCAA
CTCTCCTTCGTGGTACCACCCATGATGCGGGACTTAACGAAGGGCAGGAC
AATCTTCCGAGAACATGCGACGAATGTGCGCAACATTGTGGAGGGAGTAC
TAAGTGATATCCATATAAAAACTCTGCACTCGACTAAGTCATTCGAGGAC
GTCTACGAGCGGTTTGGCCATGATAGAAACGTTGTCAGCCTGATTGTGTG
CTTGCTTATTCTTCTGGTACTTTTTATTTTGATCTTTGCTCTACTGTGCG
GTTGCTTTGGGCGCCGACGAACTGGATATGGTGATGAATGCTGCAGCAAG
TCCACCGGAGCCACCTGCCTGCTTCTAGCCATACTGCTGATATTCTGTGT
TTTCTCCTTCATCGCACTGGTTGGACTTTTCTACTTTATGCTGGGTATGG
TAACCTACCAGGGTGCCTGTGCACCACTGAGAGATCAGGAGAACAACACA
TTGTTCCGGCAACTGGACGCGTCTATAGATCTGAATCACTATTTGCCGCC
ATCTGAAAGTAACAAGGAAGTGGTGCAACCACTAAAAATGTCGAGTGCAA
TCAAGGCTTGCCACGCCAATCAGACCATTTTCGATATGATGCGTCAGCAT
AACATATATGACATCAACGATCTGACGCGCATAAAAGTGATGTCACACTC
ACAGGAAAATACAGATTCGATTAAGGTCTTCGACGAGGACCTGTCCACCG
TGGTACTCCTGACGAAGGAAGAACGTGACGAGTTAAAGACAGCGGGCGAG
AGCAAGCTTGCGAAGTACCATAGCTCCCTGTACATGCCAAGTCTGTGCAC
CCAGTTTACGCCCATGAACCTGAACGCCCTGTCCGAGCAGCTGTATAAGC
TATCCAACGATCTGGAGTATCCGGCATACGGCTGGGCCAAGGTGTCATTC
TGGAATGAGGGCCTCAACACCAAGGCCTTCTATCGCAATTTTGTACCGAA
GCTTACGAGCCTCGTAGAGAAGATGAAGGCCAATCTAAAGAAGATCGACG
AGTTAATTTCGTACGAGAACCACGACTTTACCAATACAATCAAAATTCTC
ACTGCCACGGCCATCAACTCCGAACAGTTCATCCAAACACGCGGCAAGGA
CTATATCAACGCCCTAGGAGGCAATCTGACGAATTCCATTGACCAGATGA
TCGACGACTACATAGATATGATTATAAAGGAGGCCAACGAAAGTGTGGGT
CATTGTGCACCCCTGTCGTACATATATTATCGTGGAGTCGATTTGATTTG
CCACCGTATCGTGGATCCCATCAATGGATTCTGGGTAGGCATACTGCTGT
GCGCCCTGCTCTTCCTGCCCATCCTGTTCGTGGCCCACCGCCTGATGTGC
CTCTACAAGAAAATCTATCCTTACCTGGCTACCGTAGGAGCCGCTGGAGT
GGTCGAGGGCGGAAGCGATTATCTGTACGATGCTTATAGTGAACGAGATC
GTGAACATGTACCATTGGCTAACGTTCCCAAGAAGCGTCGCAAGGCCTAC
GAGCGGCGACGGGAGCAGCAGGATTACTTCGAGGACGCCTCGCCCAGCGT
TTCGCGTGGCAATCGCTCTGGCGGAGATCGTGGTGGCGGCGGAGGTGATG
GAGCTCCTGGCAGCAGCAGCATGCGTTACAACGACATGGCGCCAACGCAT
TGGGACCACGAGCCACCACGATACCACAATCCCCCAGCTGCGCCGCCATC
ATCGGAGTACGAGCGTCCGCCGCCCTACTACTATCCGGGTGCCTCCGAGC
AGGATTAGAAGCTTTCTAGACCAT
BS23993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prominin-like-RE | 3042 | CG7740-PE | 1..3042 | 17..3058 | 15210 | 100 | Plus |
| prominin-like-RA | 3042 | CG7740-PA | 1..3042 | 17..3058 | 15210 | 100 | Plus |
| prominin-like-RC | 3042 | CG7740-PC | 1..3042 | 17..3058 | 15210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prominin-like-RE | 3491 | CG7740-RE | 277..3320 | 16..3059 | 15220 | 100 | Plus |
| prominin-like-RA | 4106 | CG7740-RA | 479..3522 | 16..3059 | 15220 | 100 | Plus |
| prominin-like-RC | 3828 | CG7740-RC | 201..3244 | 16..3059 | 15220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3118034..3118979 | 2572..1627 | 4730 | 100 | Minus |
| 3L | 28110227 | 3L | 3120666..3121071 | 421..16 | 2030 | 100 | Minus |
| 3L | 28110227 | 3L | 3119210..3119548 | 1519..1181 | 1695 | 100 | Minus |
| 3L | 28110227 | 3L | 3120027..3120214 | 884..697 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 3117082..3117256 | 2947..2773 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 3119798..3119963 | 1050..885 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 3120459..3120607 | 567..419 | 745 | 100 | Minus |
| 3L | 28110227 | 3L | 3117834..3117973 | 2712..2573 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 3119604..3119735 | 1180..1049 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 3120272..3120400 | 696..568 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 3115919..3116031 | 3059..2947 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 3119043..3119153 | 1626..1516 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 3117346..3117406 | 2772..2712 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:07:48 has no hits.
BS23993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:21 Download gff for
BS23993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RA | 480..3521 | 17..3058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:32 Download gff for
BS23993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RC | 202..3243 | 17..3058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:44 Download gff for
BS23993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RC | 202..3243 | 17..3058 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:44 Download gff for
BS23993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3115920..3116031 | 2947..3058 | 100 | <- | Minus |
| 3L | 3117083..3117256 | 2773..2946 | 100 | <- | Minus |
| 3L | 3117346..3117405 | 2713..2772 | 100 | <- | Minus |
| 3L | 3117834..3117973 | 2573..2712 | 100 | <- | Minus |
| 3L | 3118034..3118979 | 1627..2572 | 100 | <- | Minus |
| 3L | 3119043..3119152 | 1517..1626 | 100 | <- | Minus |
| 3L | 3119213..3119548 | 1181..1516 | 100 | <- | Minus |
| 3L | 3119604..3119734 | 1050..1180 | 100 | <- | Minus |
| 3L | 3119799..3119963 | 885..1049 | 100 | <- | Minus |
| 3L | 3120027..3120214 | 697..884 | 100 | <- | Minus |
| 3L | 3120272..3120400 | 568..696 | 100 | <- | Minus |
| 3L | 3120459..3120606 | 420..567 | 100 | <- | Minus |
| 3L | 3120668..3121070 | 17..419 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:32 Download gff for
BS23993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3117083..3117256 | 2773..2946 | 100 | <- | Minus |
| arm_3L | 3117346..3117405 | 2713..2772 | 100 | <- | Minus |
| arm_3L | 3117834..3117973 | 2573..2712 | 100 | <- | Minus |
| arm_3L | 3120027..3120214 | 697..884 | 100 | <- | Minus |
| arm_3L | 3120272..3120400 | 568..696 | 100 | <- | Minus |
| arm_3L | 3120459..3120606 | 420..567 | 100 | <- | Minus |
| arm_3L | 3115920..3116031 | 2947..3058 | 100 | <- | Minus |
| arm_3L | 3120668..3121070 | 17..419 | 100 | | Minus |
| arm_3L | 3118034..3118979 | 1627..2572 | 100 | <- | Minus |
| arm_3L | 3119043..3119152 | 1517..1626 | 100 | <- | Minus |
| arm_3L | 3119213..3119548 | 1181..1516 | 100 | <- | Minus |
| arm_3L | 3119604..3119734 | 1050..1180 | 100 | <- | Minus |
| arm_3L | 3119799..3119963 | 885..1049 | 100 | <- | Minus |
BS23993.pep Sequence
Translation from 16 to 3057
> BS23993.pep
MGEVAATVEPLAAVKSKSMRSRKRRQRRRRQIAYLAICGLSVAIFGFALA
TLIRPTTAQADADPGSWRKGYVGHGTTHEQLGQPHWPPVQYTVYRPTTNY
TKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYIVVKNSDTLSLGPK
VEENDWRDLLAHYWMVLIWVVILVVLIIVIPFIAVCYCCFCCCRRCRQGC
PPCTSKQDAQRRFCCGICLLILIIGLIFGIIIAFVTNKMIDSGFAETSET
MKRGSEDTCTYLKDVADHVHHLMMYNYEEMETHVLDQLTHAHRHIFLDLS
DTSESNSLAEMERVLENMPEALELMRQVEKMEKDLRFYGSQLRDGVRGIK
RDVNFAVANLCQLQMCQKFLISSNIEHIDSSQCLHFDNLPNTKEFVEGME
NIVASEYYAIPQRGLSRLKKVSDKVKTQLSFVVPPMMRDLTKGRTIFREH
ATNVRNIVEGVLSDIHIKTLHSTKSFEDVYERFGHDRNVVSLIVCLLILL
VLFILIFALLCGCFGRRRTGYGDECCSKSTGATCLLLAILLIFCVFSFIA
LVGLFYFMLGMVTYQGACAPLRDQENNTLFRQLDASIDLNHYLPPSESNK
EVVQPLKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTD
SIKVFDEDLSTVVLLTKEERDELKTAGESKLAKYHSSLYMPSLCTQFTPM
NLNALSEQLYKLSNDLEYPAYGWAKVSFWNEGLNTKAFYRNFVPKLTSLV
EKMKANLKKIDELISYENHDFTNTIKILTATAINSEQFIQTRGKDYINAL
GGNLTNSIDQMIDDYIDMIIKEANESVGHCAPLSYIYYRGVDLICHRIVD
PINGFWVGILLCALLFLPILFVAHRLMCLYKKIYPYLATVGAAGVVEGGS
DYLYDAYSERDREHVPLANVPKKRRKAYERRREQQDYFEDASPSVSRGNR
SGGDRGGGGGDGAPGSSSMRYNDMAPTHWDHEPPRYHNPPAAPPSSEYER
PPPYYYPGASEQD*
BS23993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prominin-like-PE | 1013 | CG7740-PE | 1..1013 | 1..1013 | 5373 | 100 | Plus |
| prominin-like-PA | 1013 | CG7740-PA | 1..1013 | 1..1013 | 5373 | 100 | Plus |
| prominin-like-PC | 1013 | CG7740-PC | 1..1013 | 1..1013 | 5373 | 100 | Plus |
| prominin-like-PB | 1013 | CG7740-PB | 1..1013 | 1..1013 | 5373 | 100 | Plus |
| prominin-like-PG | 993 | CG7740-PG | 1..993 | 1..1013 | 5234 | 98 | Plus |
