BS23996.complete Sequence
3362 bp assembled on 2011-02-22
GenBank Submission: KX806387
> BS23996.complete
GAAGTTATCAGTCGACATGGACGACTTTATCAAGACACTGATTGCCGAGG
TGAAGTCGCAGGGCGTCTTCGACGAATTCCGATTCAACTGCTGCCTGGCG
GACGTGGACACGAAGCCCGCCTACCAGAATGTGCGCACCCAGGTGGAGAC
GGCGGTCAACGATTTTCTGGCCAAGCAGCAATGGACGCCCGAGACCAACA
AGGTCCAGCTGCGAGAGAGGCTGCGCAAGCACCTTATGGACTCCGATGTC
CTGGACAAGGGAGTGGACCAAATCGTGGACCAGGTGGTCAATCCCAAGGT
GGCTACCATATTCGAGCCAAAGATCGAGAGCATTGTCTACAAGTACCTGG
GCATCACACCACCTGCGCGACCCACTATGCTGTCAGCTCCGCCTTTGCCG
CCATTTGGTGCCCACTTGAACGGCAGCAGCCTGCTCAATGTGGAGACCAC
GGTTGGTCTGCTGCCCACGGACCTGGAGCAGATAAGTCCAGACTCCGATC
GGGCTACCGTCAAGTCGGAGTCGAGGGATGACGAACTTCCGCCCGGTGTA
GACGACGAGGACACTTCGCCATCCTACGAGCTAGTGAGCGAGCGGAAAAC
ACTTGCCATCAAGGAGGAGCTGAACAACGTTTCGTTGAATAACTCGGATT
CGGTGAACGGCGTCTCCCAGGCGTCGCAACTTTCGCAGGTTTCCAGTGAC
AGCCGCCTGACCATGGCGTCGTCCACGGAGTCCATGGTTGATAGCCACCA
GCACACAGCAGCTCACAACAGTGGGGAGCCAGAGAACATTTGCGAGGAAG
CGCAAATGCCAAAGTTCAGCGAAAACTCTTGGGATGCTAGTGCGGGAACA
GGCCGAAGCGAAGGTCGACAGCTTCACTTCGACATCAAACAGGATGCCAT
TACCTTCGAAGGTACTGAGCGAAAGAACTCGGTGTCGGAGACGACTAGCA
CAGGCCTCCAAATTCTTTCCATCGAGGATGAGATCATGTCGGAGGTGAAG
GCAAACATAGACGACGCCAACAATGCCAGTATTGAGTCTATAGCACCGGA
GCCTGTACAAGTGCCAGCACCGCCGAAAGTTAATCCGCCTCCTCCTCCGC
GGCCAGCCTCGCCAAAAGTAGAGCCTCCTCCGCCGGCACCACCAGGAGTT
GAGTCGCCGCCAGGGCCCCAACCACCAGCGTCACCTCGTTTTGATCCACC
TCCACCACATACAATTGAGCCACCGCCACCACCAGCACCACCAACACTTG
TGCCACCGCCACCACCAGCACCACCAACAATTAAGCCACCGCCACCCCCA
GCACCACCTACAGTTGAGCCACCGCCACCACCACCACCAGCACCACCTAC
AGTTGAACCGCCGCCACCACCACCACCAGCACCAACTAAAGTTGAACCAC
CTCCTCCACCGGCACCAGCTGAAGTTGAACCACCTCCTCCACCGGCACCC
ACAGAACTTGAACCACCTCCTCCTCCAGCACCACCGAAAGTCGAGCTTCC
TCCTCCGCCAGCCCCACCAAAAGCTGAGGCAGCTATAACGCCCCGAAGGG
CGAAAGGTAGTAATGGATTCATCACAGAGCTGGCCGTGACACCCAAGGAG
TCGGAAACTCGGGATAAACCACACAATGTAAACACGGATGTCAAAGAAGA
TGAGCAACCAGCAACAACTGAAGACAAGCAAGATAAACCCCTAGAGCTTG
GATTGGATGCACCAAAAGACGCTGTTAGCACAGCGTCTGAGTCCACGGAG
TCGCCAACATCCACGTCCTCGCAATCAAAAAGCCATTCGAAGTCTAGGGA
TAAGGAAAAGGAAAAGGATCGGCGACACCACAGGCACTCAGATGACAAAC
ACCGGCGAAGGAGCACAGATCGGGACCGCGATCGTAGTCGCGACAAATCG
CACAGCAAGCATTCCTCGAGTTCCAGCTCGAAGCACTCCTCATCGAACTC
CTCCAGCTCGAAGCATAAGAGTAGTAGCTCCAAGAACGATAAGAGCTCCT
CAAGTTCATCTAGCCGGAGTAATCGAGAGTCGTCGTCATCCAAGCGCTCG
GGAACCACTTCTTCATCACGCCACGAATCTTCCTCACACAAAAAACACAA
GTCCAGTTCATCATCCTCGCGATCGGAACGAGATAAAGGCAAGGAGAAGG
ATAAGGAAAGGGAAAAGGACAGCCAAAGTCGCAGCCACCACAGCAGTAGC
AGTTCCTCGTCGTCGTCAAGGAGAAAAGATCACGACCGAGGCCGCGATCG
TGATCGTAACAAATCAAACACTTCTGGCAGTGCAGAGAACAAGGCTATCC
ACGATGATCATAGCGAGAGCAAAGAAAAGTATAAGCAGCGTCGGGGTTCC
GACTCAAACGACGAGGGGAAGCCTCCAAGTTCTGGTGGTCCGGCCAAGAA
CTCCCAGCCGGAGGATTCAGCAGCTACAATGAAATCAGATGCGCCCGTGG
AGAATGCTAACGGCACGAATGGAAACTCCAACGGCAGCACCAATGGTGCT
TGCGACAATGTCAGCGGTGTTGTCATCGTGAGCGACATCCTGCAGCAATC
GACGAGCAGTTTTGTTGAACTGACCGCTGGATCCCAATCGCATGACAGAG
CGGAGAGCAGTAAGCATGAACCCGAAGATATAGACGGAAAAGAGGCGGAT
AATCAGCCGGAAAAAACAGAATTGGAGGCAAGGCAAGACGAGTGTGCTTC
GCAGAATGAAGTGCCAACTGTAGAACCTCAAACTTTAGCTGACTCCGTTC
CCGATTTGCCAGCCAAGGAAAGCATGGATACATTGGAAGACGAAAAGGTA
GAGACCAATGTCGAAGAGAATAAGTCAGAAGAGGAGAGCAAACCGGAAAA
TCCTCCCGAAGAGTGCGTCGACGAACCTGCTCAAGTCGGCGATGTGGAGG
ATCCACCGCAAGATGCTGACAAACCCGCCACACCAGTCCCAATCTCGAAT
GAGCAAAGCGACGAATTTAGTGCCGACTTTGTGACCCACTTCGAAGAAAA
CACAGACGAGTTTAGGACGCGTCTGCAGCTCATCAATCAACTGATAGAGG
ATCGAAAGAATTTGCTTAACAGGTTAAGTGAGGATGGAACACAGGAGGAG
GCAGTGGATATACGTGCCTTGCGACGCAGCCTCTCCAAGCGAAGACGGAG
CAGCATGCAGGAGCAGCATCGAGTGGAGCGGGAAACGACACCGCCGCAGC
CTAGAAGTCCGAGCAGCAGCAGCACCGCCGGCAGTCCGGCAAAGAGACTG
CGACAGGACGAGCCCAAGTCATCGCCAACACCATCTGACGCCAGCATAAA
CTCGAAGGAGAACGAGGCACTGGAGAAGCAGGAGCATGCTGTATGAAAGC
TTTCTAGACCAT
BS23996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5514-RC | 3330 | CG5514-PC | 1..3330 | 17..3346 | 16650 | 100 | Plus |
| CG5514-RA | 3330 | CG5514-PA | 1..3330 | 17..3346 | 16650 | 100 | Plus |
| CG5514-RE | 3456 | CG5514-PE | 1..3323 | 17..3339 | 16615 | 100 | Plus |
| CG5514-RC | 3330 | CG5514-PC | 1213..1507 | 1196..1490 | 640 | 82.4 | Plus |
| CG5514-RC | 3330 | CG5514-PC | 1180..1474 | 1229..1523 | 640 | 82.4 | Plus |
| CG5514-RA | 3330 | CG5514-PA | 1180..1474 | 1229..1523 | 640 | 82.4 | Plus |
| CG5514-RA | 3330 | CG5514-PA | 1213..1507 | 1196..1490 | 640 | 82.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5514-RC | 3799 | CG5514-RC | 133..3464 | 16..3347 | 16660 | 100 | Plus |
| CG5514-RA | 3695 | CG5514-RA | 133..3464 | 16..3347 | 16660 | 100 | Plus |
| CG5514-RE | 3649 | CG5514-RE | 133..3456 | 16..3339 | 16620 | 100 | Plus |
| CG5514-RC | 3799 | CG5514-RC | 1313..1607 | 1229..1523 | 640 | 82.4 | Plus |
| CG5514-RC | 3799 | CG5514-RC | 1346..1640 | 1196..1490 | 640 | 82.4 | Plus |
| CG5514-RA | 3695 | CG5514-RA | 1313..1607 | 1229..1523 | 640 | 82.4 | Plus |
| CG5514-RA | 3695 | CG5514-RA | 1346..1640 | 1196..1490 | 640 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27939705..27942133 | 910..3338 | 12145 | 100 | Plus |
| 3R | 32079331 | 3R | 27938977..27939649 | 241..913 | 3365 | 100 | Plus |
| 3R | 32079331 | 3R | 27938694..27938918 | 16..240 | 1125 | 100 | Plus |
| 3R | 32079331 | 3R | 27939991..27940285 | 1229..1523 | 640 | 82.4 | Plus |
| 3R | 32079331 | 3R | 27940024..27940318 | 1196..1490 | 640 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:37:20 has no hits.
BS23996.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-22 13:48:01 Download gff for
BS23996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5514-RC | 389..3717 | 17..3345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:31 Download gff for
BS23996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5514-RA | 134..3462 | 17..3345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:03 Download gff for
BS23996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5514-RA | 134..3462 | 17..3345 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:03 Download gff for
BS23996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27938695..27938918 | 17..240 | 100 | -> | Plus |
| 3R | 27938977..27939647 | 241..911 | 100 | -> | Plus |
| 3R | 27939707..27942136 | 912..3345 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:31 Download gff for
BS23996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23764417..23764640 | 17..240 | 100 | -> | Plus |
| arm_3R | 23764699..23765369 | 241..911 | 100 | -> | Plus |
| arm_3R | 23765429..23767858 | 912..3345 | 99 | | Plus |
BS23996.pep Sequence
Translation from 16 to 3345
> BS23996.pep
MDDFIKTLIAEVKSQGVFDEFRFNCCLADVDTKPAYQNVRTQVETAVNDF
LAKQQWTPETNKVQLRERLRKHLMDSDVLDKGVDQIVDQVVNPKVATIFE
PKIESIVYKYLGITPPARPTMLSAPPLPPFGAHLNGSSLLNVETTVGLLP
TDLEQISPDSDRATVKSESRDDELPPGVDDEDTSPSYELVSERKTLAIKE
ELNNVSLNNSDSVNGVSQASQLSQVSSDSRLTMASSTESMVDSHQHTAAH
NSGEPENICEEAQMPKFSENSWDASAGTGRSEGRQLHFDIKQDAITFEGT
ERKNSVSETTSTGLQILSIEDEIMSEVKANIDDANNASIESIAPEPVQVP
APPKVNPPPPPRPASPKVEPPPPAPPGVESPPGPQPPASPRFDPPPPHTI
EPPPPPAPPTLVPPPPPAPPTIKPPPPPAPPTVEPPPPPPPAPPTVEPPP
PPPPAPTKVEPPPPPAPAEVEPPPPPAPTELEPPPPPAPPKVELPPPPAP
PKAEAAITPRRAKGSNGFITELAVTPKESETRDKPHNVNTDVKEDEQPAT
TEDKQDKPLELGLDAPKDAVSTASESTESPTSTSSQSKSHSKSRDKEKEK
DRRHHRHSDDKHRRRSTDRDRDRSRDKSHSKHSSSSSSKHSSSNSSSSKH
KSSSSKNDKSSSSSSSRSNRESSSSKRSGTTSSSRHESSSHKKHKSSSSS
SRSERDKGKEKDKEREKDSQSRSHHSSSSSSSSSRRKDHDRGRDRDRNKS
NTSGSAENKAIHDDHSESKEKYKQRRGSDSNDEGKPPSSGGPAKNSQPED
SAATMKSDAPVENANGTNGNSNGSTNGACDNVSGVVIVSDILQQSTSSFV
ELTAGSQSHDRAESSKHEPEDIDGKEADNQPEKTELEARQDECASQNEVP
TVEPQTLADSVPDLPAKESMDTLEDEKVETNVEENKSEEESKPENPPEEC
VDEPAQVGDVEDPPQDADKPATPVPISNEQSDEFSADFVTHFEENTDEFR
TRLQLINQLIEDRKNLLNRLSEDGTQEEAVDIRALRRSLSKRRRSSMQEQ
HRVERETTPPQPRSPSSSSTAGSPAKRLRQDEPKSSPTPSDASINSKENE
ALEKQEHAV*
BS23996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5514-PC | 1109 | CG5514-PC | 1..1109 | 1..1109 | 5782 | 100 | Plus |
| CG5514-PA | 1109 | CG5514-PA | 1..1109 | 1..1109 | 5782 | 100 | Plus |
| CG5514-PE | 1151 | CG5514-PE | 1..1108 | 1..1108 | 5778 | 100 | Plus |
| CG5514-PD | 1150 | CG5514-PD | 1..1107 | 1..1107 | 5774 | 100 | Plus |
| CG5514-PB | 1150 | CG5514-PB | 1..1107 | 1..1107 | 5774 | 100 | Plus |
