Clone BS24011 Report

Search the DGRC for BS24011

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:240
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG18542-RA
Protein status:BS24011.pep: full length peptide match
Sequenced Size:782

Clone Sequence Records

BS24011.complete Sequence

782 bp assembled on 2011-02-03

GenBank Submission: KX806394

> BS24011.complete
GAAGTTATCAGTCGACATGCAGCCATTTATTGTCATTCGCAACTACACGC
AAGATGATGAGCTCAAGTGCCAGGAGCTGGTGCGGGACTACATCATGTCG
TTCTCGAATAAGTCCTTTTTTGTCTATTGCTTTCGAGAGATCACCCTGCA
GTTCATAGTCATCACGTGGGCCATATTCTTCATATTTCTGGGAGTGCCCC
TGCTTTTTTGTGCACTCACTGTGCCCGCTTGCATATTTTGCCTATTTACC
GGCACCTACTTCTCGTTTTACTCCAAGGCAGTGGAGTTGATGAGGACCAA
ACCATCGCAGTCTTTGGTGGCCGAGTGCTATGAACCCTTCATTTTCCGCT
GCTCACCGAAGGAAGCTAGCTACCAGATATTTACCGAGAACTGTCCATAC
GAGGAAACATACACGAGGAAATTCCGGCGCAGGATTGTGGCCGCTATTAG
TGTGAAGAATCACCACGCCGTATACAATGCTGCATGGATCTATCGCTTTG
CCATCGATCCCCATTACCCGTGTCAGACGATCATGGACCCCATGATAAAA
CTGGTGGTCAAGAACTGCATTATCGGCGGGTACGCCTCACTGGAGTGCAC
TATCTCCGAGTGGCAGGAAAGTGAGCGCGACTTTTATGATGATTTTGGGT
TCGTTACGCGGCAGATCTACCACAAAAAGATCATTGGCAGCAGTTTGGCA
GTGATGAAAACCCAGCTGACCTATGGGTTACGTACCGACGGAGCAGCTTT
GCACAAGCAAAACTAGAAGCTTTCTAGACCAT

BS24011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32939-RA 750 CG32939-PA 1..750 17..766 3750 100 Plus
CG18542-RA 750 CG18542-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32939-RA 1264 CG32939-RA 91..840 17..766 3750 100 Plus
CG18542-RA 1263 CG18542-RA 90..839 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9686246..9686717 295..766 2360 100 Plus
3R 32079331 3R 9693566..9694037 295..766 2360 100 Plus
3R 32079331 3R 9686032..9686189 138..295 790 100 Plus
3R 32079331 3R 9693352..9693509 138..295 790 100 Plus
3R 32079331 3R 9685849..9685971 17..139 615 100 Plus
3R 32079331 3R 9693169..9693291 17..139 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:07:10 has no hits.

BS24011.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:34 Download gff for BS24011.complete
Subject Subject Range Query Range Percent Splice Strand
CG32939-RA 91..840 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:30 Download gff for BS24011.complete
Subject Subject Range Query Range Percent Splice Strand
CG18542-RA 90..839 17..766 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:55 Download gff for BS24011.complete
Subject Subject Range Query Range Percent Splice Strand
CG18542-RA 90..839 17..766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:55 Download gff for BS24011.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9685849..9685971 17..139 100 -> Plus
3R 9686034..9686189 140..295 100 -> Plus
3R 9686247..9686717 296..766 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:30 Download gff for BS24011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5511571..5511693 17..139 100 -> Plus
arm_3R 5511756..5511911 140..295 100 -> Plus
arm_3R 5511969..5512439 296..766 100   Plus

BS24011.pep Sequence

Translation from 16 to 765

> BS24011.pep
MQPFIVIRNYTQDDELKCQELVRDYIMSFSNKSFFVYCFREITLQFIVIT
WAIFFIFLGVPLLFCALTVPACIFCLFTGTYFSFYSKAVELMRTKPSQSL
VAECYEPFIFRCSPKEASYQIFTENCPYEETYTRKFRRRIVAAISVKNHH
AVYNAAWIYRFAIDPHYPCQTIMDPMIKLVVKNCIIGGYASLECTISEWQ
ESERDFYDDFGFVTRQIYHKKIIGSSLAVMKTQLTYGLRTDGAALHKQN*

BS24011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32939-PA 249 CG32939-PA 1..249 1..249 1335 100 Plus
CG18542-PA 249 CG18542-PA 1..249 1..249 1335 100 Plus