BS24024.complete Sequence
2948 bp assembled on 2011-02-15
GenBank Submission: KX802786
> BS24024.complete
GAAGTTATCAGTCGACATGCTGAAAATGGCAATGGCAAATGGTGCAAATC
CGCTGCAAACAATGAAGAAAGCAAACGGCGACGAGGAGTCCGATGAGTCC
GATATGGAAGAAGAGGAGGAGGATGAGGAAGACGAGGAGGAGGACGATCT
GCCGGATGTAGCACTCCAAATCGACAGCGAGGATGAGGCGGAACTGGAGG
CGCAGCGCATTCGTTTGGTGGAAGAAGAAGCAGCCAAGACAACAAAAAAG
GCCGAGAAAGAACGGCAGCAGCTGCAACAAAAACAACAACGGCAAGCGCA
GGTCAGTAACGGTAACGAAGAGCAGCTGGAGGAAACTCAAAAACCCAGCA
ACAACAAACGCAAGGCCCGTGGGAGGCCAAAACGCAAGATATCCACTAGC
TCGCAGGCCTCCAGTGCCTCCATCGCCTCCAGTGCTACCTTGGTGGCCGC
TCAAGTTCTCGCAGATCAGAAGTCACGCCGCTTCATCTACAGCTGTACCA
GCTGCACACACCACTACGACGACAACCTGATCCTGTCCAGACACTTCCAG
CTGGAGCATGTCGAGAAATCGAAAAGGAAGCGAGGCAAAACCAAGGCTGC
TGCTGAAGAACCCATGGTTACTCCTCCCTTGATCATTGATCCCTTGGAAA
TGGGCCAACTTAAGCCCTGCGCCCAGTTGCTTGTCCAAGGAGAATCCGTG
CTGCAATTATGCCTCGCCTGTAATTCACAGTTTGTGGATGTGGTACGCTT
TCAGGAGCATCTTAGCCAGCAGCATGGCTATTTTCAGTTGCTGGTGCCCA
AGGAGGAACCCACCGATCTCCCACCGCATGCCATGGTCACAATTCCCGGG
GCTCTGGCTCTGAACAAGGCCAATGCCCAGCTTCAGCTGCCCATTCCAGC
TCCGGAAACTCCGCCACCCGAGCAGGACGGCAAGGAGGCTCCACCAAGTA
ACGCGTCCAATGACAAGGAGGATCTCACCATGATCAACGACATGGTGGCG
GTTATTGCAGCCGAGCGAGTGAAGAAAACCAGCAGCTCCAAGGTCAACAA
GATGATCATCAAACTTCCTATGCCCAAAAAAAGAGGCAGAAAGCGCACCA
AGCCGGAGAGCCTGCGAGACGAACAGGATAATGCGGAGAAGACGGACAAG
AAGAAAAAACTGAACAAAGAGGAGGGACAGCAGCCAGTATTGGAGCCACT
GCAGGCCAAAAAAACAAGCAACCAGGCGGAGAACGGTGCAACGCAGTCAA
ATAATGTCGTAAAAGTTCAACAGAACGCAAAGGGATCAAAAAAAGACGGT
ACTCAGTCGGCCCAGAAATCTGAGACTAATCCCAAGCACCTAGAGAATGC
TGAGACAAATTCAAAGGATAATACAGAATCCGTGGCTCTGAAAGAAACCA
TCCACGATAAGCAGTTGACAATCGATGAAGCAGGCAAAGCAGGGACACAA
AAAGATGACAACAGCAACCAGAAGCAGTTGGACAAGAGTGAGGCGAATGC
TGGCAAATCTAAAATGGTGGATCAAGTGCATCAGCAAATGCCTGTCGAGA
GTGCAAAGGATCACCAGCAGATGACAGAGGAACCCACCAATTCAACCAAG
CGCAAGCGCGGACGCAAAGAGCGTAAGTCACCGACACCCGTACTCATTCC
GCTGGGAGACAAAGAAATCAAGGAGGAGCCAGAACTCCCAGAGCGGCGCA
TGCGCAAGAGCCGCCAGCATGTGGACTACGTTGTCGAAATTAAAGATGAG
GAGGAGGATGATGACGAGGTGGAAGAGGCTGAGGTGGATGATGACTCCTC
AGCCACTATTTCGCCGCACAACAGCTCAACAGATGAGAGTTTTACCTCGA
TTAAACGTGAGTCATCGGAGGAATCGCAGCACAACGGAATCGGGGGAATT
CACACCTGTAATTTCTGTGGCAAAACCTTTAAGCGCTTCTCAAGAATGCA
AGATCACCTGCGCCTCCATACCGGCGAGAAACCATACGTGTGTGGACAGT
GCGGCAGGGCTTTCCGTCTAAAGATGCGTCTGGTGGAGCATCAATTGCGT
CATCGCGCCGAGAAGGCATACAAATGCGATATCTGTTCAATGCCACTGGC
CACCAAGCAGGATCTCTCGCTGCACATGCGTCATCACAAGAACGATCGGC
GGTACAAGTGCGACAAGTGCAACAAAGGATTTGTTCGCAGCTCAGATTTG
TCCATCCACGTGCGGATTCACACGGGTGAAAAGCCATACAGCTGCGATCT
GTGTGGTAAGGCGTTCCGTGCACGCCAAAATCTGGTGGTCCATCGACGCA
CTCATCTCGGCGATAAACCCATTCAGTGCGAGCTGTGCGACAAGCGTTTC
GCCCGCAAGATAGATATGCGGGTGCACATGCGCAGGCACACAGGTGAAAA
ACCCTACAACTGCGATGCCTGTCAGCGTGGCTACTCGTCGCGTGTAAATC
TATTGCGCCACCAGGAGCGGGAGCATGGCATCGAGGAGCAAGTCCCTGGA
TCTGGCCAGGCGGATAAGAAGCACACAAAAACGGCAACAGAAAACGAGCA
AGAAAACGAACCCAAAGCCAAAGCAGCGCCACGACGTCCGCGACGCGAGA
AGCTGCAGCAAAAGATTGCTGCTCAGGAGAAGCTACTGAATGACCTGAAG
CGTAGCTTGAGTGCTATGCCAGAAATACCTGAGGAGTCAGCGCAGGTCAA
ACTTGATGGATCTGGCCAGGACATACCGGCAGATGCCGGAGCAGGACATG
CTCAAGTCCAAGTCACGCTGTCCATGCAAATGGAGCCAGCACCCAATACC
GAAGACGACGAGGAGATCACGCCGGAGAAGGAGAACGCTTTGTCCAGCTC
GATGACAGCCGATGGCAAGACAAAGGCGAATCGCAAGATAACCAGCTACT
TCACTGTCGTGGGTCAGCAGGCGGAAATTTAAAAGCTTTCTAGACCAT
BS24024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7372-RA | 2916 | CG7372-PA | 1..2916 | 17..2932 | 14580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7372-RA | 4172 | CG7372-RA | 135..3054 | 14..2933 | 14600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15620035..15621601 | 14..1580 | 7835 | 100 | Plus |
| 3L | 28110227 | 3L | 15621657..15623012 | 1578..2933 | 6780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:57:24 has no hits.
BS24024.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:41 Download gff for
BS24024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7372-RA | 80..2993 | 17..2930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:51 Download gff for
BS24024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7372-RA | 138..3051 | 17..2930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:58 Download gff for
BS24024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7372-RA | 138..3051 | 17..2930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:58 Download gff for
BS24024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15620038..15621600 | 17..1579 | 100 | -> | Plus |
| 3L | 15621659..15623009 | 1580..2930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:51 Download gff for
BS24024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15613138..15614700 | 17..1579 | 100 | -> | Plus |
| arm_3L | 15614759..15616109 | 1580..2930 | 100 | | Plus |
BS24024.pep Sequence
Translation from 16 to 2931
> BS24024.pep
MLKMAMANGANPLQTMKKANGDEESDESDMEEEEEDEEDEEEDDLPDVAL
QIDSEDEAELEAQRIRLVEEEAAKTTKKAEKERQQLQQKQQRQAQVSNGN
EEQLEETQKPSNNKRKARGRPKRKISTSSQASSASIASSATLVAAQVLAD
QKSRRFIYSCTSCTHHYDDNLILSRHFQLEHVEKSKRKRGKTKAAAEEPM
VTPPLIIDPLEMGQLKPCAQLLVQGESVLQLCLACNSQFVDVVRFQEHLS
QQHGYFQLLVPKEEPTDLPPHAMVTIPGALALNKANAQLQLPIPAPETPP
PEQDGKEAPPSNASNDKEDLTMINDMVAVIAAERVKKTSSSKVNKMIIKL
PMPKKRGRKRTKPESLRDEQDNAEKTDKKKKLNKEEGQQPVLEPLQAKKT
SNQAENGATQSNNVVKVQQNAKGSKKDGTQSAQKSETNPKHLENAETNSK
DNTESVALKETIHDKQLTIDEAGKAGTQKDDNSNQKQLDKSEANAGKSKM
VDQVHQQMPVESAKDHQQMTEEPTNSTKRKRGRKERKSPTPVLIPLGDKE
IKEEPELPERRMRKSRQHVDYVVEIKDEEEDDDEVEEAEVDDDSSATISP
HNSSTDESFTSIKRESSEESQHNGIGGIHTCNFCGKTFKRFSRMQDHLRL
HTGEKPYVCGQCGRAFRLKMRLVEHQLRHRAEKAYKCDICSMPLATKQDL
SLHMRHHKNDRRYKCDKCNKGFVRSSDLSIHVRIHTGEKPYSCDLCGKAF
RARQNLVVHRRTHLGDKPIQCELCDKRFARKIDMRVHMRRHTGEKPYNCD
ACQRGYSSRVNLLRHQEREHGIEEQVPGSGQADKKHTKTATENEQENEPK
AKAAPRRPRREKLQQKIAAQEKLLNDLKRSLSAMPEIPEESAQVKLDGSG
QDIPADAGAGHAQVQVTLSMQMEPAPNTEDDEEITPEKENALSSSMTADG
KTKANRKITSYFTVVGQQAEI*
BS24024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7372-PA | 971 | CG7372-PA | 1..971 | 1..971 | 5020 | 100 | Plus |
| CG6654-PA | 639 | CG6654-PA | 171..598 | 403..815 | 469 | 27.9 | Plus |
| crol-PH | 686 | CG14938-PH | 240..431 | 629..820 | 441 | 38.5 | Plus |
| crol-PC | 756 | CG14938-PC | 239..430 | 629..820 | 441 | 38.5 | Plus |
| Meics-PB | 571 | CG8474-PB | 97..506 | 487..872 | 438 | 28.8 | Plus |
| crol-PH | 686 | CG14938-PH | 183..429 | 629..879 | 414 | 33.2 | Plus |
| crol-PH | 686 | CG14938-PH | 303..579 | 607..872 | 356 | 29.5 | Plus |
| crol-PH | 686 | CG14938-PH | 179..407 | 653..885 | 346 | 31.1 | Plus |
| CG6654-PA | 639 | CG6654-PA | 374..576 | 620..821 | 345 | 31 | Plus |
| Meics-PB | 571 | CG8474-PB | 374..563 | 631..815 | 332 | 34 | Plus |
| CG6654-PA | 639 | CG6654-PA | 470..602 | 631..763 | 252 | 33.1 | Plus |
| Meics-PB | 571 | CG8474-PB | 406..567 | 606..763 | 244 | 32.3 | Plus |
