BS24038.complete Sequence
1301 bp assembled on 2011-01-28
GenBank Submission: KX802222
> BS24038.complete
GAAGTTATCAGTCGACATGTCGCACGGTGGAGCCGGTGGCGGTCTGGGAG
CTCAAACTGTTGGAGCCGGCCAACTTGGAGGCGGTGCAGCGGCAGCTGGC
GGTGGAGAATACCGCGAACTCCACTGGACGGTCTCAAGCGTAATGGACTC
GTCTCGGGTCTCCACCTGCCTCATATCAATGCTGCTGATAGTCTACGGCA
GCTTTCGCTCCTTAAACATCGAGCAGGAGGCCCGCGAGCGGGAGCAGAAG
AAGCGAAATGAATCGATGACCAATCTTCTTACCGGCGAGCCCGTCGAGAA
GGAACCAAATCTGTATTTCACAGCGGATAAATTCGCCACTCTGGACACGA
TGCATGCCCTCTGTTTGCCTCTCGGAGCTTCCATCTCACTGCTCATCATG
TTCTTCTTCTTCGACTCGATGCAGCTGCTCTTCGCCGTCTGCACAGCGAT
TATAGCCACCGTGGCGCTGGCCTTTCTGCTGCTGCCCATGTGCCAGTACA
TCATCAGGCCATGCACAGATGGAAAGCGATTCTCCTTCGGATTCTGCGGT
CGCTTCACAGCCGCGGAGCTCTTCAGCTTTACGCTTTCGGTATCGATTGT
GTGCATATGGGTGCTCACTGGCCACTGGCTGCTAATGGATGCAATGGGCA
TGGGCCTGTGTGTGGCATTCATAGCGTTTGTGCGTCTGCCCAGCTTGAAG
GTGTCCACGCTGCTGTTGACCGGCCTGCTCATCTACGACGTCTTCTGGGT
ATTCCTCTCCTCGTACATCTTCAGCACTAACGTGATGGTCAAGGTGGCGA
CGCGACCCGCCGATAATCCCGTGGGCATCGTGGCCAGAAAGTTGCATCTG
GGTGGCATTGTGCGGGACACACCAAAGCTGAATCTGCCCGGAAAGCTTGT
TTTTCCCAGCCTGCACAATACCGGTCACTTCTCTATGCTGGGCCTGGGTG
ATGTGGTGATGCCGGGCCTGTTGCTCTGCTTCGTCTTGCGGTATGATGCG
TACAAGAAGGCGCAGGGCGTCACATCGGATCCCACATTGTCACCGCCCAG
AGGAGTTGGCTCCCGGTTGACATACTTTCATTGTTCCTTATTGGGTTATT
TCTTGGGCCTGCTAACGGCGACGGTCAGCTCCGAGGTCTTTAAGGCGGCC
CAGCCGGCGCTGCTGTATCTAGTGCCCTTTACGTTATTGCCGCTCTTGCT
GATGGCCTATCTGAAGGGCGACCTGCGGCGCATGTGGAGCGAGCCGTTTA
TCGCGCAACAACCATCAAAACAACTGGAAGTCTGAAAGCTTTCTAGACCA
T
BS24038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SppL-RE | 1269 | CG17370-PE | 1..1269 | 17..1285 | 6240 | 99.4 | Plus |
| SppL-RD | 1269 | CG17370-PD | 1..1269 | 17..1285 | 6240 | 99.4 | Plus |
| SppL-RF | 1254 | CG17370-PF | 1..1254 | 17..1285 | 5980 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SppL-RE | 2422 | CG17370-RE | 448..1717 | 16..1285 | 6245 | 99.4 | Plus |
| SppL-RD | 2782 | CG17370-RD | 649..1918 | 16..1285 | 6245 | 99.4 | Plus |
| SppL-RF | 2561 | CG17370-RF | 602..1856 | 16..1285 | 5985 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25886565..25887019 | 641..1095 | 2230 | 99.3 | Plus |
| 3R | 32079331 | 3R | 25885537..25885829 | 16..308 | 1435 | 99.3 | Plus |
| 3R | 32079331 | 3R | 25886307..25886498 | 450..641 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 25885880..25886020 | 309..449 | 690 | 99.3 | Plus |
| 3R | 32079331 | 3R | 25887110..25887232 | 1095..1217 | 600 | 99.2 | Plus |
| 3R | 32079331 | 3R | 25887296..25887366 | 1215..1285 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:08:34 has no hits.
BS24038.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:38 Download gff for
BS24038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17370-RE | 448..1715 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:18 Download gff for
BS24038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SppL-RD | 650..1917 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:11 Download gff for
BS24038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SppL-RD | 650..1917 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:11 Download gff for
BS24038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25887111..25887231 | 1096..1216 | 99 | -> | Plus |
| 3R | 25887298..25887365 | 1217..1284 | 100 | | Plus |
| 3R | 25885538..25885829 | 17..308 | 99 | -> | Plus |
| 3R | 25885880..25886020 | 309..449 | 99 | -> | Plus |
| 3R | 25886307..25886498 | 450..641 | 100 | -> | Plus |
| 3R | 25886566..25887019 | 642..1095 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:18 Download gff for
BS24038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21711260..21711551 | 17..308 | 99 | -> | Plus |
| arm_3R | 21711602..21711742 | 309..449 | 99 | -> | Plus |
| arm_3R | 21712029..21712220 | 450..641 | 100 | -> | Plus |
| arm_3R | 21712288..21712741 | 642..1095 | 99 | -> | Plus |
| arm_3R | 21712833..21712953 | 1096..1216 | 99 | -> | Plus |
| arm_3R | 21713020..21713087 | 1217..1284 | 100 | | Plus |
BS24038.pep Sequence
Translation from 16 to 1284
> BS24038.pep
MSHGGAGGGLGAQTVGAGQLGGGAAAAGGGEYRELHWTVSSVMDSSRVST
CLISMLLIVYGSFRSLNIEQEAREREQKKRNESMTNLLTGEPVEKEPNLY
FTADKFATLDTMHALCLPLGASISLLIMFFFFDSMQLLFAVCTAIIATVA
LAFLLLPMCQYIIRPCTDGKRFSFGFCGRFTAAELFSFTLSVSIVCIWVL
TGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFLSSY
IFSTNVMVKVATRPADNPVGIVARKLHLGGIVRDTPKLNLPGKLVFPSLH
NTGHFSMLGLGDVVMPGLLLCFVLRYDAYKKAQGVTSDPTLSPPRGVGSR
LTYFHCSLLGYFLGLLTATVSSEVFKAAQPALLYLVPFTLLPLLLMAYLK
GDLRRMWSEPFIAQQPSKQLEV*
BS24038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SppL-PE | 422 | CG17370-PE | 1..422 | 1..422 | 2175 | 100 | Plus |
| SppL-PD | 422 | CG17370-PD | 1..422 | 1..422 | 2175 | 100 | Plus |
| SppL-PF | 417 | CG17370-PF | 1..417 | 1..422 | 2127 | 98.6 | Plus |
| SppL-PC | 417 | CG17370-PC | 1..417 | 1..422 | 2127 | 98.6 | Plus |
| SppL-PB | 417 | CG17370-PB | 1..417 | 1..422 | 2127 | 98.6 | Plus |
